Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq110 147 5e-30 >seq110 Length=92542 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| || || ||||| || || | ||||||||| | | |||||| || Sbjct 52913 TCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAATCAGAAAGAGTTCTGCC 52972 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||| || ||||| ||||| | || ||||| || || ||||| |||||||| Sbjct 52973 ATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 53032 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 || |||||||||||||| ||| ||||| ||||| || | || || || || ||||| Sbjct 53033 ATCCTGGATCTTTTGCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGAT 53092 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || | || || | ||| | |||||| || Sbjct 53093 AGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 53131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528465004226