Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq115 316 3e-81 seq173 178 2e-39 seq96 145 1e-29 >seq115 Length=359903 Score = 316 bits (350), Expect = 3e-81 Identities = 1347/2103 (64%), Gaps = 49/2103 (2%) Strand=Plus/Minus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 |||||| | |||||||||||||| || |||||| ||||||| ||||| |||||| Sbjct 6809 TGTACGCAAGTAGTACATACCAGTCTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGA 6750 Query 76871 TGTCAGTTTGGA-ATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGA 76929 |||| || ||| | || || | |||||||||||| ||||| |||| || Sbjct 6749 AGTCAACTTACCCATAGTTGGGGATTGCAA-ATGAATATTCATGGACTGTGATTGACAGA 6691 Query 76930 TGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAG 76989 || | || ||||| || || ||||| | || | | || || | || ||||||| | Sbjct 6690 TGTATGCACCTCTGTCGGCAGCCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGG 6631 Query 76990 TTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG-TA--TTTTGAATGGAACCACCAT 77046 | | | || |||| | ||||| | |||| || || || || |||||| || Sbjct 6630 TACGATACAATTTCTTGAATTTCTCTGGCACATTTGGTAAGTTCTGGATAGAACCATTAT 6571 Query 77047 CTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAA 77106 | || || | ||| || ||| | |||| | | | || | || | | | Sbjct 6570 CCTTAATGATAAAGTCCTTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCA 6511 Query 77107 GGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTAC 77166 | || ||||||||| || || || || || | ||| ||||| | || || || Sbjct 6510 ACATATAAGGATTAACAATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGG 6451 Query 77167 TGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCA 77226 || |||| || | | |||| |||| |||| ||| |||| ||||| |||||||||| Sbjct 6450 ATGTGAATGGCTCGAAACATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCA 6391 Query 77227 TAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATT 77286 | ||||||| || || ||| || | || | | || || | | |||| | | Sbjct 6390 TTGGTGCCAATAACAACGAATTCCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCAT 6331 Query 77287 TCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTAC 77346 ||| ||||||||||| | ||| || ||| | ||| ||||| || || || ||| Sbjct 6330 CCCAGTCCCAAAGATCGGTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTTAG 6271 Query 77347 TAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCG 77406 || ||||| | |||||| ||| | ||||| ||||||||| |||| Sbjct 6270 ATGCTGGCGATCCTTCGTATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATT 6211 Query 77407 CTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAA 77466 |||||||||| | | || | || || || |||| |||| | || | ||||| Sbjct 6210 CTTCCAATGCAGCATGGTATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTG 6151 Query 77467 TACTATCAAACGGATAATGTAAAA-GAATAAAGGCATCTGCTAATCCCTGAACTCCAATA 77525 ||| || ||||| | | | | ||| |||| |||||| | || || | || ||| Sbjct 6150 GACTCTCGAACGGTAGACGAAGCATGAAGAAAGT-ATCTGCAAGACCTTGGATACCGATA 6092 Query 77526 CCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATG 77585 |||||||||||| |||| |||| ||| | || ||||||| ||||| || || || Sbjct 6091 GCAATAGGTCTATTTCTCATATTCGAATTACGGGCCTCTGGAACTGGATAGTAGTTCCTG 6032 Query 77586 TCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAA 77645 ||||||| | | || | || | | ||| || ||| | | | || ||| ||| Sbjct 6031 TCTATAACTCTGTTCAAGTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAG 5972 Query 77646 TCAAATC--------TTC-CATCT-AT--AACAAACATGTTCAAAGCTATAGAT--GCTA 77691 | || | ||| ||||| || ||| || || | ||| | | || || | Sbjct 5971 TTGAACCAAGACGATTTCTCATCTGATTCAACGAA--TGCTGGAAGACAGATATTAGCCA 5914 Query 77692 GATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTAC 77751 |||||| || | || || || | || |||| | | ||| |||| || Sbjct 5913 AATTACAGACACCAACTTCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGG 5854 Query 77752 TACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAA 77811 | || ||||| || ||||| | ||| || |||||| | || || | || || || | Sbjct 5853 ATGACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGA 5794 Query 77812 GAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG 77871 || || ||||| || |||||| | || | || | ||| | ||| | | | Sbjct 5793 TCATGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTG 5734 Query 77872 CTTTTATCATAGAT-TTGTATCGCCTCTCTC--TTTCATATTGAGTATATAGCCGTTCAA 77928 | || | || | || || | | | || ||||||||| || || | ||| | Sbjct 5733 CCTTGAC---AGTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGA 5677 Query 77929 ATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGT 77988 | ||||| || | ||||| | ||||| |||| || | | ||| | ||| Sbjct 5676 ACTCATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATG 5617 Query 77989 CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 78048 ||||| ||| | || || ||||| || |||||||| ||||| ||||| || | || Sbjct 5616 GACCATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAAT 5557 Query 78049 CTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATAT 78108 | |||| |||| ||||| || || ||| | | ||||| || || | |||| Sbjct 5556 CACGGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATAT 5497 Query 78109 CAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGAT 78168 | | |||||| ||||| | ||| | || || | ||||| || || ||||| || |||| Sbjct 5496 CTGCATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGAT 5437 Query 78169 CTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTC 78228 | | ||||||||| || | || | || | | ||| ||||| ||||| ||||| || | Sbjct 5436 CGACATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTAC 5377 Query 78229 CATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTA--- 78285 |||| || || | ||| || ||| | || ||||| ||| ||||||| | || Sbjct 5376 CATTGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTA----TGGATATGCATACCG 5321 Query 78286 -TTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 | || || || | ||||| |||| |||||| | ||||| |||||||||||||| || Sbjct 5320 ATACCACCGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCG 5261 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 || |||||| ||||| || | ||||| |||||| ||| | | ||| ||| Sbjct 5260 ATGGAGTCATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCT 5201 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 ||||| || || || || || |||||||| || | || ||| | || ||||| | Sbjct 5200 GCATTGAACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGAC 5141 Query 78465 TCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 |||| | || || || | ||| || || || || |||||||||| | |||| Sbjct 5140 TCAAGAACTTTAGGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGC 5081 Query 78525 TGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 78584 |||||||| || | ||| || ||| | | ||| ||||| |||||| ||||| Sbjct 5080 TGAGGTCTCTCGGCGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTG 5021 Query 78585 AAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTAT 78642 ||||| ||||| ||||| ||||| ||||| ||||| | || |||| || | | || Sbjct 5020 AAACCGAAATAATTGTAGTTGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCAT 4963 Query 78643 CTTTGTATTTGGTAACAATATCCATGACAGTAGTT-GAAATAATAGGAGATCGTACACCA 78701 | || | | ||||||| ||| | || ||||| |||||| || | | | Sbjct 4962 CCTTATGAGCCATGACAATAT-CATAGGTCTCCTTAGAAATCATAGGACAT--TTCTTCT 4906 Query 78702 T--TTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttG 78759 | | |||||||| || | | | | ||| | || ||||| ||| | ||||| | Sbjct 4905 TGGTCTTAGGATTGTAGTAATCATAAAGATCCTGGATGACATCGGAAAAGTGCTTTTTGG 4846 Query 78760 TTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTT 78819 | | |||||| | || || | || | | |||||| | ||||||| |||||||| Sbjct 4845 TCTGCTTGTGCAAGTTCGAGATTGCCAAACGTGCAGCCAATGTAGCATAGTCAGGATGCA 4786 Query 78820 GTGTAGTACAAGT-GGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACC 78878 | ||||| || || ||||| | || || | ||| |||| ||||| | || || || Sbjct 4785 GAGTAGT-CATGTAAGCTGCAGTCTCGGCAGTTAAGTTATCCAACTCAACGGTGGTCACA 4727 Query 78879 CCA 78881 ||| Sbjct 4726 CCA 4724 >seq173 Length=13397 Score = 178 bits (196), Expect = 2e-39 Identities = 600/918 (65%), Gaps = 31/918 (3%) Strand=Plus/Minus Query 47825 ATCTTCTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATT 47884 |||| |||| | |||||| || || ||||| || ||| | |||||||| || || Sbjct 11499 ATCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTT 11441 Query 47885 AGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAt 47944 || || ||| |||| || || || ||||| |||||||||||||| || || || | Sbjct 11440 CGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGAC 11381 Query 47945 ttttttAAATCCTAATTCTGAAATCAG---TCTATCTGCAACGAATTCTATATATCTTTT 48001 || | | |||| | || | ||| ||| || ||| ||| || | ||| Sbjct 11380 CTTCTCACATCCGAGA---GAGACCAGCAATCTGTCGGCACAGAAGTCAACGTATTCACA 11324 Query 48002 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTA-AGAAACTCTT 48060 |||||| || || ||||| || | | ||| |||| || || | |||||||||| Sbjct 11323 CATCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTT 11264 Query 48061 GTTCGATAGTGACAGCATCC---ACTATTATC--GATGTTACCGTTTCCTCACTTGGTGG 48115 | ||||| ||| || ||| | ||| || |||| | || || ||| || || Sbjct 11263 CT-CGATATCGACGGCCTCCGTCATGATTCTCTTGATGATG--GT---CTTACTAGGAGG 11210 Query 48116 ATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACT 48175 || | ||| ||| || | | || || || || || ||||| ||||| || | Sbjct 11209 ATGCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCA 11150 Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235 || | ||||| || ||||| ||||| ||||| | || | || || | ||| || || Sbjct 11149 GATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGAT 11090 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | || || ||||| || ||||| | || || | ||| ||||| || | |||||| Sbjct 11089 CGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTC 11030 Query 48296 TCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTAC 48352 |||| ||| || |||| ||||| | | |||||| ||||| | ||| | Sbjct 11029 GGCGTACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGAT 10970 Query 48353 ACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTA 48412 | || || || || || ||||| || | ||| ||| || |||| | ||||| Sbjct 10969 AGGTGGAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTA 10910 Query 48413 AGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCC 48472 || || | || ||| ||| | |||||||||||||| |||| ||||| || || Sbjct 10909 GGTCTCAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCC 10850 Query 48473 GTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC--AGCCAAATTC 48530 ||| || ||| || || | | ||| |||| | | || | |||| ||||| ||| Sbjct 10849 GTAGAATGCTCTTGCCTCAGGCAGCTGAACCTGC-TGCATGA-AGTTCTGGGCCAAGTTC 10792 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTA-ATAAAATATTT 48589 |||| || | |||||| || || || || || || || | | | || || ||| | Sbjct 10791 TCATCGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGAC-TCTCGATATGAAGTATCT 10733 Query 48590 TTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 48646 ||||||| ||| | || |||||||| || ||| || || | ||| | ||||| Sbjct 10732 CTCGTTGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTC 10673 Query 48647 AGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGAT 48706 || |||||||| || |||||||| || || ||||| | ||| ||||| ||| || || Sbjct 10672 GGCCGTCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAAT 10613 Query 48707 TGGGAAAATAACAAATCT 48724 ||||| || || ||||| Sbjct 10612 AGGGAACATCACGAATCT 10595 >seq96 Length=143779 Score = 145 bits (160), Expect = 1e-29 Identities = 363/543 (67%), Gaps = 10/543 (2%) Strand=Plus/Plus Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814 ||||||| || || ||||| |||||||| || ||| || | || ||||| |||| Sbjct 92040 ATTTGATGGTTCCAAGATTCTGTTGGTTTGATTTGGCATTACAGGCATCTTTATAGAGAA 92099 Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 || || || || ||||| ||| ||| | ||| | |||||| ||| || | Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159 Query 77875 TTATCATAGATTTGTAT--CGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTC 77932 | ||| | ||||||| | | | ||| | ||||| ||||||| | ||| | Sbjct 92160 TGATCT--GCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217 Query 77933 ATCTCCCCAAACATCATCCAATCCAGG-GCATTCATTTGGGCACATCAATGAC-CA-GTC 77989 || |||||||||||| | ||| || ||| | | | | || | | || ||| Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGTATCCTCAGAAAATAGACTCCACATGTC 92277 Query 77990 ACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 78049 | || ||| ||||||| ||||||||| | || || ||||||| ||| |||||||| Sbjct 92278 ATCA-CTT--TTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATG 92334 Query 78050 TCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATC 78109 | || | |||||| || || ||||||| ||||||| | || ||||| | ||| Sbjct 92335 CCTGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATC 92394 Query 78110 AGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATC 78169 || ||||||||||||| |||| || | || || | |||||| || || ||||| Sbjct 92395 TGAGTGCCATGGTTCTAAATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454 Query 78170 TATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCC 78229 | |||| | ||| | |||| || | |||||||| ||| || ||||||| || Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514 Query 78230 ATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCC 78289 |||||| || |||||||| |||| ||| | | |||||||||| ||||| || || Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAATGTGCATCCCAATACC 92574 Query 78290 TCC 78292 || Sbjct 92575 ACC 92577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667245678560