Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq115 300 2e-76 seq96 167 3e-36 >seq115 Length=359903 Score = 300 bits (332), Expect = 2e-76 Identities = 1198/1870 (64%), Gaps = 37/1870 (2%) Strand=Plus/Minus Query 75371 TCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTT 75430 |||| |||||||| |||| | | || | | |||||| | |||||||||||||| Sbjct 6844 TCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGTC 6785 Query 75431 TTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGA-ATAACTCGGATC 75489 || |||||| ||||||| ||||| |||||| || | || ||| | || Sbjct 6784 TTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGAT 6725 Query 75490 GGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 75549 || | |||||||||||| ||||| |||| |||| | || ||||| || || ||||| Sbjct 6724 TGCAA-ATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAGCCAT 6666 Query 75550 TTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATC 75609 | || | | || || | || ||||||| || | | || |||| | || Sbjct 6665 ATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTCTC 6606 Query 75610 TGGAAGATTTG-TA--TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTC 75666 ||| | ||||| || || || || || || ||| || || | ||| || | Sbjct 6605 TGGCACATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCATTGC 6546 Query 75667 ATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAA 75726 || | |||| | | ||| | || | | | | || |||||||||||| || || Sbjct 6545 ATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCTGGAA 6486 Query 75727 TTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 75786 || || | ||| ||||||| || || || || |||| || | | |||| || Sbjct 6485 CTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATTCGTT 6426 Query 75787 GTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 75846 || |||| ||| |||| || || ||||| ||||| ||||||| || || ||| || Sbjct 6425 GTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAATTCCT 6366 Query 75847 GAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTAC 75906 | || | | || || | | |||| | | ||| ||||||||||| | |||| Sbjct 6365 CAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAAGATCGGTTGGTTT 6306 Query 75907 AACATCCCAGAGATCGTATTGTAGAATTCCGTT----GCTAGCATATGATCCATTATATG 75962 || ||| | ||| ||||| || || || || ||| || ||||| | |||| Sbjct 6305 CTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGC----GATCCTTCGTATG 6250 Query 75963 TTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAA 76022 || || || || |||| ||||||||| ||| | || || ||| | | || | Sbjct 6249 TTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGGTATA 6190 Query 76023 TTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTA 76082 || || || |||| |||| | || | ||||| |||| || || || | | | Sbjct 6189 AAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGGTAGACGAA 6130 Query 76083 AAA-GAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 76141 | ||| ||| | |||||| || || || | || ||| |||||||||||| |||| || Sbjct 6129 GCATGAAGAAA-GTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCTCATA 6071 Query 76142 TTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 || ||| | || ||||||| || || || || | ||||||| | | || | || Sbjct 6070 TTCGAATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAAGTTA 6011 Query 76202 CTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT-----CAA----ATTTTCCA 76252 | ||| || ||| | | | || ||| ||| | ||| |||| || Sbjct 6010 CGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTTCTCA 5951 Query 76253 TCTATCACAAACA-TATT--AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTA 76309 ||| ||| | | | |||| ||| || | |||||| || | || || || Sbjct 5950 TCTGATTCAACGAATGCTGGAAGACAGATATTAGCCAAATTACAGACACCAACTTCTTTT 5891 Query 76310 GCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 | || |||| | | ||| ||||| || |||| ||||| || ||||| Sbjct 5890 GGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCGAGATTC 5831 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 | ||| || |||||| ||||||| | || || || | | || ||||| ||||||||| Sbjct 5830 TTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGTTTCA 5771 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGAT-TTGTATCG 76488 | || | || | ||| | ||| | | || || | || | || || | Sbjct 5770 GTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGAC---AGTTCTTCTACCA 5714 Query 76489 CTTCTCTC--TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCC 76546 | | || ||||||||| || || || ||| || ||||| || | ||||| Sbjct 5713 CGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGGAA 5654 Query 76547 AAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTC 76606 | |||||| |||| || | | ||| | ||| ||||| ||| | || || ||| Sbjct 5653 AGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCACACGCTTC 5594 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 || || |||||||| ||||| ||||| || | ||| |||| |||| ||||| || Sbjct 5593 ATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCTTA 5534 Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || ||| | | ||| | ||| || | ||||| | |||||| ||||| | ||| Sbjct 5533 CCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTCCAAATAG 5474 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 | || || |||| || || || ||||| || ||||| | |||||||||||| | || Sbjct 5473 ACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGTACTGTTG 5414 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 | || | | ||| ||||| || || ||||| |||||||| || || | ||| || Sbjct 5413 AAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAATGTATGAG 5354 Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906 ||| |||||||| ||| ||| | || || || || || ||||||| |||| | Sbjct 5353 CCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGAAATTAAA 5294 Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGA 76966 || || | ||||| || || ||||| || || || ||||| ||||| || | Sbjct 5293 GCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGCAACCAAG 5234 Query 76967 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGA 77026 ||||| |||||| ||| | | ||| |||||||| ||||| || || || ||||| Sbjct 5233 AAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAAGCATGC 5174 Query 77027 GTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGA 77086 ||||| | || ||| | || ||||| | |||| |||| ||||| | | Sbjct 5173 GTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGAATATCACTACCA 5114 Query 77087 TGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTT 77146 || || || || || |||||||||| | ||||||||||| || | ||| || Sbjct 5113 TGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCGACTTTACCGTTG 5054 Query 77147 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 77204 ||| | | ||| ||||| |||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 5053 ATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAATTGTAGTTGAAA--T 4996 Query 77205 CTCTTTCGTA 77214 |||| ||||| Sbjct 4995 CTCTATCGTA 4986 >seq96 Length=143779 Score = 167 bits (184), Expect = 3e-36 Identities = 573/879 (65%), Gaps = 41/879 (5%) Strand=Plus/Plus Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 || ||||||| ||||||| |||||||||| | | | ||| | ||| ||| || | Sbjct 91694 TATATTGTTTGGAAAATCATCTTATTAAGCTTTGTGGATTCTTTAG-ATCCAAATGACAT 91752 Query 76079 TGTAAAAG-AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | | | || |||| |||| || | ||| || ||||||| | | || || | ||| | Sbjct 91753 CCTCATACTAAAAAATACATCGGCCAATCCTTGTACTCCAACAGCTATTGGACGATGCTT 91812 Query 76138 CTTATTGGAAATTTCAGC-TTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGA 76196 | ||| || || | || ||| | ||||| || || || || | | |||| | Sbjct 91813 CAAATTCGATCTT-CGGCATTCCTCCAGTGGGTACGAACCAACGTCAATGACTCTATTAA 91871 Query 76197 GATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT--TTTCCATC 76254 ||||| |||| |||||| ||| || | ||||| | |||| ||| ||||| || Sbjct 91872 GATTTTGAACAAGGACTTTAGTCACATCATGAAGTTTCTGGAAATTAAAGGATTTCCTTC 91931 Query 76255 TAT-------------CACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTA 76301 | ||| |||| ||| | | || ||| |||||||||||| | Sbjct 91932 CCTGAGAGTTGGTTTCCACGTACATTGGGAGACCAACTGAACCTAAATTACAAACGGCAA 91991 Query 76302 CCTCATTAGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAG 76358 | || | | |||| | |||| | | ||| || ||||| | ||||| | Sbjct 91992 CTTCGT---CCTTGGAAGAGTATTCAACAACCTCACAACAAAGATTGGATGATTTGATGG 92048 Query 76359 TTCCAAGATTTTGTTGGTTGCTCTTTTTG--TTACATGAGTCCTTATAAAGAACAAACGG 76416 |||||||||| |||||||| | ||| | ||||| | || ||||| |||| || || Sbjct 92049 TTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAAGGAAAGG 92106 Query 76417 AGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTAT 76476 || |||||||| ||| ||| | ||| | |||||| ||| || || || Sbjct 92107 TGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCTTGATCT- 92165 Query 76477 AGATTTGTAT--CGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCC 76534 | ||||||| | ||| ||| | ||||| ||||||||| | ||| | || ||| Sbjct 92166 -GCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTTGTCACCC 92224 Query 76535 CAAACATCATCCAAACCAGGA-CATTCATTCGGACACATCAATGACCAC---TCACCATC 76590 ||||||||| | || ||| || | || | | | | | |||| ||| || | Sbjct 92225 CAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACATGTCATCA-C 92282 Query 76591 TTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGT 76650 || ||||| | ||||||||| | || || ||||||| ||| |||||||| | || Sbjct 92283 TT--TTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCCTGGC 92340 Query 76651 TCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATG 76710 | |||||| || || ||||||| ||||||| | ||| ||||| | ||| || || Sbjct 92341 CCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTGAGTG 92400 Query 76711 CCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATA 76770 ||||||||||| |||| || | || || | |||||| || || ||||| | ||| Sbjct 92401 CCATGGTTCTAAATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATCAACATA 92460 Query 76771 TCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGT 76830 | | ||| | |||| || | |||||||| ||| || ||||||| |||||||| Sbjct 92461 TTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCCATTTGT 92520 Query 76831 TCCAGAAATATAACTTCCACATGCACGAATATTACTAAT 76869 || |||||||| |||| |||| | | ||||||||| Sbjct 92521 ACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932804809280