Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 seq110 107 4e-18 >seq1 Length=504328 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| ||||||||||||||||| | | |||||| || ||||| | Sbjct 435094 CAAG-TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCA 435152 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || ||||| || | ||||| || || | | |||||| ||||| || |||| Sbjct 435153 ACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGTGGGATTCCCTCCTTATCCTGAA 435212 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || |||||| | || | | |||| ||| ||| ||||| | ||||| || || | Sbjct 435213 TCTTCTGCTTGACATTGTCAATGGTGTCAGAAGACTCGACTTCCAAGGTAATGGTCTTAC 435272 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 |||| | ||||| ||||| | |||||| || Sbjct 435273 CCGTCAAGGTCTTAACGAAAATTTGCATTCTA 435304 >seq110 Length=92542 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || || || || |||||||| | | |||||| |||||||| | Sbjct 52922 CAAG-TGAAGGGTAGATTCCTTCTGAATATTGTAATCAGAAAGAGTTCTGCCATCTTCCA 52980 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| | ||||| || || | | ||||||||||| || || | Sbjct 52981 ACTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCCTGGA 53040 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| |||||| | || | |||| ||| ||| || || | || ||||| || | Sbjct 53041 TCTTTTGCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATAGTCTTAC 53100 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || ||||| ||||| | ||||| || Sbjct 53101 CTGTAAGGGTCTTAACGAAAATTTGCATCTT 53131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818153784109