Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq110 138 2e-27 seq1 129 1e-24 seq109 114 3e-20 >seq110 Length=92542 Score = 138 bits (152), Expect = 2e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || || || ||||| |||| ||| || | |||||| || | ||||| || ||||| Sbjct 52937 TTCCTTCTGAATATTGTAATCAGAAAGAGTTCTGCCATCTTCCAACTGTTTACCAGCAAA 52996 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | ||||| ||| ||||| || ||||| || ||||||||| || || | Sbjct 52997 GATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTTTGCTTGACATT 53056 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| |||||||||| ||||| || | ||||| |||||||| || | |||||||| Sbjct 53057 GTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATAGTCTTACCTGTAAGGGTCTTAAC 53116 Query 283088 GAATATCTGCATTTTCATA 283106 ||| || ||||| || ||| Sbjct 53117 GAAAATTTGCATCTTGATA 53135 >seq1 Length=504328 Score = 129 bits (142), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | ||| |||| || | ||| || |||||||||||||| |||| Sbjct 435073 ACCACCTCTCAATCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGA 435132 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | || || || | || || || || || ||||| | ||||| ||| || Sbjct 435133 AAGAGTTCTACCGTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGTGG 435192 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || |||||||| || || ||||| ||| || || | || || ||||| |||| |||| Sbjct 435193 GATTCCCTCCTTATCCTGAATCTTCTGC-TTGACATTGTCAATGGTGTCAGAAGACTCGA 435251 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||| | || || |||||||||||||| ||||||||||| || |||||| Sbjct 435252 CTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATT 435301 >seq109 Length=92601 Score = 114 bits (126), Expect = 3e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| ||||||| || || || | || ||| ||| || || ||||| ||||||||| Sbjct 53802 GGGAAACCTTCCACTTGGCCATTTGCCATTGCCTTCAAAAGAGTGGACTTACCAGCACCA 53861 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 || || |||||||||||||| | || || ||||| | || | || || |||| | Sbjct 53862 TTAGGACCGCAAAGACCATATCTCTTACCACGCTTCAAACGAAGTTGAGTCTTATTCAAA 53921 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 |||||||| ||||||| |||| |||||| ||||| | ||||| ||||| || Sbjct 53922 AGAATCTTGGCACCATAAGCCAAAGAGAATTCACAGTTACACAAATCCTCACC 53974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736799369066