Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 145 5e-30 seq110 129 4e-25 >seq1 Length=504328 Score = 145 bits (160), Expect = 5e-30 Identities = 175/234 (75%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || ||||||| ||| | |||| |||||| ||| ||||||||||||||||||||| Sbjct 435071 ATACCACCTCTCAATCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCA 435130 Query 44168 G--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | ||||| | |||| |||| |||||| || || || ||||| | ||| ||||| | Sbjct 435131 GAAAGAGTT--CTACCGTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAG 435188 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGA 44283 || | || ||||| ||| ||||||||||| || ||| | |||||||| | || Sbjct 435189 GTGGGATTCCCTCCTTATCCTGAATCTTCTGCTTGACATTGT--CAATGGTGTCAGAAGA 435246 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| ||||| ||||| ||||| | |||||| ||||| |||||||| Sbjct 435247 CTCGACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCAT 435300 >seq110 Length=92542 Score = 129 bits (142), Expect = 4e-25 Identities = 174/237 (73%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 44105 TTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAA 44164 ||| | || ||||||| |||||| |||| |||||| || ||||| || || |||||| Sbjct 52896 TTCTTACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAA 52955 Query 44165 TCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | ||||| || | || |||| ||| || || ||||||||||| | ||| |||| Sbjct 52956 TCAGAAAGAGTTCT-GC-CATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGAT 53013 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGC 44280 | | || | |||||||| ||| ||||| ||||| || ||| | || ||||| | Sbjct 53014 CAGGTGGAATTCCTTCCTTATCCTGGATCTTTTGCTTGACATTGT--CGATCGTGTCCGA 53071 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||| || || ||||| || || |||||||| ||||| |||||||| Sbjct 53072 AGACTCGACCTCCAAGGTGATAGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCAT 53128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989614658443