Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq110 147 5e-30 seq1 125 2e-23 >seq110 Length=92542 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || ||||| || || |||||| | ||||| || || ||| Sbjct 53125 CAAATTTTCGTTAAGACCCTTACAGGTAAGACTATCACCTTGGAGGTCGAGTCTTCGGAC 53066 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||| ||||| || |||||||| || || || || || Sbjct 53065 ACGATCGACAATGTCAAGCAAAAGATCCAGGATAAGGAAGGAATTCCACCTGATCAACAG 53006 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||| | |||||||| || |||||| | ||||| || | Sbjct 53005 AGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACTCTTTCTGATTACAATATT 52946 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || || || | || |||||| | ||| Sbjct 52945 CAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGA 52907 >seq1 Length=504328 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || || ||| | || || || || ||| Sbjct 435297 CAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTCTGAC 435238 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || ||||||||||| || || |||||||| || || || || Sbjct 435237 ACCATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAGGGAATCCCACCTGATCAACAG 435178 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || ||| | ||||| || || |||||| | ||||| ||| || Sbjct 435177 AGATTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGATTACAACATC 435118 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || || | ||| | ||| | ||| Sbjct 435117 CAAAAGGAGTCCACTCTTCACTTGGTTCTTAGATTGAGA 435079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728439317726