Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq23 170 2e-37 >seq23 Length=838141 Score = 170 bits (188), Expect = 2e-37 Identities = 587/894 (66%), Gaps = 31/894 (3%) Strand=Plus/Minus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 |||||||| ||| | |||||||||||||| || ||||| | || || || |||||| Sbjct 743032 TGGTAATCGGAAACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCC 742973 Query 15974 ATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGA-GTACCCCAGTTCC-GTAAC 16029 || ||||| || ||||| ||||| || | | ||| | | | || || ||||| Sbjct 742972 ATGAAATCGAATGGATTTGTAGCGTTGTAGA---CTTTGTCGCAGCCTAGGGAGAGTAAC 742916 Query 16030 TAATCTATCTGCTACA-AATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088 ||||| || || ||| || || | ||||||| |||| | || ||||| || || | | Sbjct 742915 -AATCTGTCGGC-ACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGA 742858 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAA-AAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || || | || | | | | ||| | || ||| || | || ||||| | ||| Sbjct 742857 GAGAAACAGGTAATGCATCTCTCCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCATG 742799 Query 16148 ATATCGGTG--GCTCGTGTT--TCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203 || | |||| | | | || | || ||||| || | || || | ||| || Sbjct 742798 ATCTTGGTGATGATTTTCTTATTAGGAGGGTGT----TTCAAATGAGAGAATAATAGGCA 742743 Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 ||||| ||| ||||| ||||||||||||| |||||||||||| || || || | || Sbjct 742742 GGCGAAATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACC 742683 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323 |||||| |||| ||||||| ||| || || || |||||||| || || ||||| | Sbjct 742682 TGGCATCAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGAC 742623 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAAT 16383 ||| || | || || || |||| |||| ||| ||||| ||||| || | || Sbjct 742622 ACCTTCGATAGCGGCGAAGGCGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGAT 742563 Query 16384 CCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443 ||| | ||||| || |||| || || || ||||| ||||| ||||| Sbjct 742562 CCAACGAAGAGCCCATAATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAA 742503 Query 16444 CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTC 16503 || | || ||||| |||| | | || || |||| || | | || | || Sbjct 742502 TAAGTAATCAGATTCCTTCTTATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTC 742443 Query 16504 TGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTG 16563 || || |||||||| | ||||| ||||| |||||| | |||||| | | || Sbjct 742442 AGAATGGATGTTCTCCACCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTG 742383 Query 16564 TAC-TTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAA 16622 || ||| || || | || || ||||||| |||||||| ||| || |||| Sbjct 742382 AACGTTCTGTGTGAAGT-TTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAA 742324 Query 16623 AAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG---AATATGCCA 16677 | || |||| | | |||| ||||||||| |||| | | |||| | | ||| Sbjct 742323 AGAAGGCCAACACACGTGC--GATGAAATATCTTTCATTGGCATTAAGCTTGTTCTTCCA 742266 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTGCCT 16736 || | ||| || || | ||| | ||||| | ||||| |||| | || | |||| Sbjct 742265 GTCAGGAACATCCTTTGAGAGATCGATCTCTTCCGCAGTCCAGAAAGAT-GCTTCAGCCT 742207 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTAT 16790 | || ||||| | ||||||||||| |||||| || || || | ||| |||||| Sbjct 742206 TCTTGTACATCTGCCAAATATCATCGTATTGGATAGGGAACATGACAAATCTAT 742153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413914156320