Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq23 170 2e-37
>seq23
Length=838141
Score = 170 bits (188), Expect = 2e-37
Identities = 587/894 (66%), Gaps = 31/894 (3%)
Strand=Plus/Minus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
|||||||| ||| | |||||||||||||| || ||||| | || || || ||||||
Sbjct 743032 TGGTAATCGGAAACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCC 742973
Query 15974 ATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGA-GTACCCCAGTTCC-GTAAC 16029
|| ||||| || ||||| ||||| || | | ||| | | | || || |||||
Sbjct 742972 ATGAAATCGAATGGATTTGTAGCGTTGTAGA---CTTTGTCGCAGCCTAGGGAGAGTAAC 742916
Query 16030 TAATCTATCTGCTACA-AATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088
||||| || || ||| || || | ||||||| |||| | || ||||| || || | |
Sbjct 742915 -AATCTGTCGGC-ACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGA 742858
Query 16089 GTCGTACCGGAAGAGCTTTTGTTAA-AAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147
| || || | || | | | | ||| | || ||| || | || ||||| | |||
Sbjct 742857 GAGAAACAGGTAATGCATCTCTCCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCATG 742799
Query 16148 ATATCGGTG--GCTCGTGTT--TCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203
|| | |||| | | | || | || ||||| || | || || | ||| ||
Sbjct 742798 ATCTTGGTGATGATTTTCTTATTAGGAGGGTGT----TTCAAATGAGAGAATAATAGGCA 742743
Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263
||||| ||| ||||| ||||||||||||| |||||||||||| || || || | ||
Sbjct 742742 GGCGAAATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACC 742683
Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323
|||||| |||| ||||||| ||| || || || |||||||| || || ||||| |
Sbjct 742682 TGGCATCAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGAC 742623
Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAAT 16383
||| || | || || || |||| |||| ||| ||||| ||||| || | ||
Sbjct 742622 ACCTTCGATAGCGGCGAAGGCGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGAT 742563
Query 16384 CCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443
||| | ||||| || |||| || || || ||||| ||||| |||||
Sbjct 742562 CCAACGAAGAGCCCATAATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAA 742503
Query 16444 CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTC 16503
|| | || ||||| |||| | | || || |||| || | | || | ||
Sbjct 742502 TAAGTAATCAGATTCCTTCTTATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTC 742443
Query 16504 TGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTG 16563
|| || |||||||| | ||||| ||||| |||||| | |||||| | | ||
Sbjct 742442 AGAATGGATGTTCTCCACCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTG 742383
Query 16564 TAC-TTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAA 16622
|| ||| || || | || || ||||||| |||||||| ||| || ||||
Sbjct 742382 AACGTTCTGTGTGAAGT-TTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAA 742324
Query 16623 AAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG---AATATGCCA 16677
| || |||| | | |||| ||||||||| |||| | | |||| | | |||
Sbjct 742323 AGAAGGCCAACACACGTGC--GATGAAATATCTTTCATTGGCATTAAGCTTGTTCTTCCA 742266
Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTGCCT 16736
|| | ||| || || | ||| | ||||| | ||||| |||| | || | ||||
Sbjct 742265 GTCAGGAACATCCTTTGAGAGATCGATCTCTTCCGCAGTCCAGAAAGAT-GCTTCAGCCT 742207
Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTAT 16790
| || ||||| | ||||||||||| |||||| || || || | ||| ||||||
Sbjct 742206 TCTTGTACATCTGCCAAATATCATCGTATTGGATAGGGAACATGACAAATCTAT 742153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511413914156320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |