Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq12 269 3e-67
seq23 217 2e-51
>seq12
Length=1129233
Score = 269 bits (298), Expect = 3e-67
Identities = 749/1142 (66%), Gaps = 20/1142 (2%)
Strand=Plus/Minus
Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840
|||||||||| || || || ||||| ||||||||| ||||||| |||||||| || || |
Sbjct 52962 ACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCA 52903
Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900
||||||| ||||| |||||| |||||| ||| | |||| | ||| | ||||||
Sbjct 52902 TGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCTGAGCCT 52843
Query 53901 TTATTATAGATTTGTATCTCTTTTCTC--TTTCGTATAGTGTATACAATCGTTCAAACTC 53958
| | || | | | | | | ||| | ||||| | || || || ||||||||
Sbjct 52842 TGACGGTACGTCT--ACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACTC 52785
Query 53959 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 54018
|||||| | || | | || ||| ||| || | | | | ||| | ||
Sbjct 52784 GTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGACC 52725
Query 54019 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 54078
|| | || || || ||||| || | || |||||||| || ||| || | ||| |
Sbjct 52724 GTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCACG 52665
Query 54079 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 54138
|| | |||||| || || ||||||| | | ||| | ||| | | || || |
Sbjct 52664 GGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTGC 52605
Query 54139 ATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 54198
||||| ||||||| || | | || | || || | |||||| ||||| || || |
Sbjct 52604 GTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGAC 52545
Query 54199 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 54258
|||||| || ||||| || |||| | | |||||||||||||||||| || | ||| ||
Sbjct 52544 GTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGTT 52485
Query 54259 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCC 54318
||| |||| ||| || ||| ||||||||| || ||| | ||| || || ||
Sbjct 52484 GGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGCC 52425
Query 54319 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 54378
|| | || || || || || || ||| || ||||| |||||||| || ||| |||
Sbjct 52424 GGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAATC 52365
Query 54379 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 54438
||| |||| || | ||| ||| |||||| || || | || |||||||| ||
Sbjct 52364 GTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGAA 52305
Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498
|| || ||||||||||| || || | || || | ||| || || |||||||
Sbjct 52304 CAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCGA---- 52249
Query 54499 TGAGTCT----ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 54554
||| ||| ||||| ||||||||| || || || | ||| | || || || |
Sbjct 52248 TGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTG 52189
Query 54555 GTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAAC 54614
|||| || | | || || ||| ||| | ||||| ||||| ||||| ||||
Sbjct 52188 GTCTCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAAC 52129
Query 54615 CAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTAT 54674
|||| |||||||| ||||| || |||||| |||| | ||||| | | ||| || |
Sbjct 52128 CAAAGTAGTTGTAGTTGAAGTCACGGTCGTAATTAATGGCAGAGTTCAACTCATCTTTGT 52069
Query 54675 ATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAG 54734
| | | ||| || ||||| || | || ||| | ||| |||| |
Sbjct 52068 GTCTCATCACTGTGTCATAGGTAAGTTGCGAGACCATAGGACATGCCTTCTTGGTTTTCG 52009
Query 54735 GATTGACATAGT---TAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTT 54791
|||| ||||| | | | |||| | || || || ||||| ||||| | |
Sbjct 52008 GATT---ATAGTAACTGTAGAGCTCCTGGACAACATCCGAGAAGAGTTTCTTTGTCTGCT 51952
Query 54792 TGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAG 54851
|||| | ||| || | ||| | ||| ||||| | |||||||||||| ||||| ||||
Sbjct 51951 TGTGCAAATTCGAAATGGCGAGTCTGGCGGCCAAAATGGCATAATCAGGATGGATCGTAG 51892
Query 54852 TACAAGT-GGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTA 54910
| || || || || | || ||||||| | | || ||||| || || || || || | |
Sbjct 51891 T-CATGTACGCAGCGGTCTCAGCTGTCAAATTATCTAATTCAACTGTGGTAACCCCCTCA 51833
Query 54911 TA 54912
||
Sbjct 51832 TA 51831
Score = 156 bits (172), Expect = 5e-33
Identities = 604/929 (65%), Gaps = 45/929 (5%)
Strand=Plus/Plus
Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440
||||| |||| | || ||||| ||||| ||| ||| || || | || || ||
Sbjct 997091 GATCCCTCATAGCTTTCATATGGCCCTTCTTTCATAGCAAGCTCCATAGATGCTTCCAAG 997150
Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC-TTCCAGGCTATC 53499
|| || | ||| ||||||| |||||||| | ||| || || | || ||| | || |
Sbjct 997151 GCCCCATGATAGATGGTTTGGAAGATCTCCAAATTGAG-TCGTCTGGATTCTCGACTTCC 997209
Query 53500 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559
||| || | || | || |||||| ||||| | ||| ||||| |||| | | || ||
Sbjct 997210 AAACGGTAACTTCATTTCAAAAAACGCATCTGCAAGTCCCTGAACTCCAACAGCAATTGG 997269
Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619
|| || || ||||||||| ||| |||| | |||||| | |||||| |
Sbjct 997270 CCTGTGCTTCATATTAGAGACCTCACATTCTTTCAGAGGATATGCTCCGACATCTATGAC 997329
Query 53620 TTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-- 53677
|||||| || |||| |||||| |||| | ||||| | | || ||||
Sbjct 997330 CCGATTGAGATTATGAACAAGAACTTTGGTCACAGAATGGAGTTTCCGGAGATTAAATGT 997389
Query 53678 TGTCCATCTATTACAA---------ACAT-----GTTCAATGCAATAGATGCCAGATTAC 53723
|| || || || || | |||| | | ||| | | || |||| |||||
Sbjct 997390 TGGCCGTCCATCACTAGCCCTCTCAACATAACTAGGT-AATCCTAACGAGGCCAAATTAC 997448
Query 53724 AAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACA 53781
| ||||| | |||| | || | ||||| | | |||| ||||||||| |
Sbjct 997449 ATACGGCAATTTCATC--CTTCGATGAATATTCAACAACCTCACAGCAAAGATTCGAGGA 997506
Query 53782 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 53841
||||||||||| || || ||||| || ||| ||| || |||||||||||||| |
Sbjct 997507 TTTGATGGTTCCCAAGTTCTGTTGGTTCGACTTGGAGTTGCAGGCATCCTTATAAAGCAA 997566
Query 53842 GAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTT 53901
||| || || || |||||| |||| || || ||| | ||| || ||||||| |
Sbjct 997567 GAAAGGAGTTCCTGTTTCAGTCTGTGAAATTAGGATCTTCTCCCACACTTTACGAGCCCT 997626
Query 53902 TA--TTATAGATTTGT-ATCTCTTTTCTCT-TTCGTATAGTGTA-TACAATCGTTCAAAC 53956
| | | || | ||| | | | ||| ||| || | || | | |||||||
Sbjct 997627 CACCTGACGAATATAAGATCCC----CGCGATTCATATT-TGCAGTAGAGTTGTTCAAAG 997681
Query 53957 TCGTCTCCCCAAACATTGTCC---AATCCAGGACATTCATCCGGACACATCAACGACCAC 54013
| ||||||| || ||| ||||||||||| |||| | | || ||||
Sbjct 997682 GATTTTCCCCAA-CA--GTCAGATAATCCAGGACAGGTATCCTCCGAAAACAGGCTCCAC 997738
Query 54014 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 54072
|| | || | | ||| |||||||| || | ||| || ||||||||||| ||| |||||
Sbjct 997739 ACTTCATCGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGAGC-ATAGAATAG 997797
Query 54073 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 54132
|| |||| || || || || || |||||||| | || | ||| |||| ||
Sbjct 997798 GTCCCTGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAGTCTAAGAATTCCATGAT 997857
Query 54133 ATCAGAATGCCACGGTTCCAAGTATATGGTC--ATAACTCCAGGCCGTTTGTTTCCTCCC 54190
||| | |||||||||||| | ||| | | ||| | ||||| ||||| || || |||
Sbjct 997858 ATCCGCATGCCACGGTTCTA--GATAGGCACAGATAGCACCAGGTCGTTTATTACCACCC 997915
Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250
|| || | ||| |||||| | || | |||| || ||| || | ||| ||| | |||
Sbjct 997916 TGGTCAACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAATTCCACTTGAT 997975
Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCC 54279
| |||||||| || || |||||| ||||
Sbjct 997976 TCTCCATTGGTACCCGATATATAGGTTCC 998004
>seq23
Length=838141
Score = 217 bits (240), Expect = 2e-51
Identities = 584/877 (67%), Gaps = 36/877 (4%)
Strand=Plus/Minus
Query 23865 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTG 23924
|||||||| || || || || || | ||||| || ||||||||||||||| |||||||
Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955
Query 23925 GTAACATTATAGATTCTTTTAAATCCCAATTC-AGAAATCAATCTATCTGCGACA-AACT 23982
||| | || |||| | | | | || | || || |||||| || || ||| || |
Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAA-CAATCTGTCGGC-ACAGAAGT 742897
Query 23983 CCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAG 24042
| | |||| | |||||| ||||||||||| || | || ||| || | || |
Sbjct 742896 CAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTC 742837
Query 24043 TA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTG-----TTT 24096
| ||||| |||| ||||||| || || || || || |||||| || |||
Sbjct 742836 TCCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCAT----GATCTTGGTGATGATTTT 742782
Query 24097 CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGAC 24156
||| | | || || | ||||| || | | || ||||||||| |||| ||
Sbjct 742781 CTT-ATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
| |||||||| | || | |||||| || || || || || ||||| | || | ||| |
Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| |||||||| |||| ||||||||| || || ||||| | ||||| | || || ||||
Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603
Query 24277 CAATAAGTCTTTCTCCATAACCGGC------GCTGTCATGTATCCACTTTTGAGCCCAAT 24330
| | | ||||||| | || || ||||| || ||||| |||||||
Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGT--TG-ATCCAACGAAGAGCCCATA 742546
Query 24331 CGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCAT 24390
||||| | || | || || || || || |||||||| | || | ||| |
Sbjct 742545 ATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCT 742486
Query 24391 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 24450
| ||||| | || || || |||| ||| ||| ||| | || ||||| ||||| || |
Sbjct 742485 TCTTATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCCA 742426
Query 24451 TGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC-TTCTATACAAAAT 24509
|| || ||||||||||| |||||||| | | ||| || |||| | ||
Sbjct 742425 CCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAA-- 742368
Query 24510 CGTTCTG--CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567
||| || ||||| |||| || || || ||| ||| ||||| || ||||| |||
Sbjct 742367 -GTTTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACAC 742309
Query 24568 GTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCAATCATTGATATCTTTA 24623
|| || |||||| |||| | ||| ||| || ||||| ||| | ||| ||
Sbjct 742308 GTGCGATGAAATATCTTTCAT-TGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTT 742250
Query 24624 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 24683
|| | ||| | |||||| | ||||| || ||||| || ||||| || ||||| | |||
Sbjct 742249 GAGAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAA 742190
Query 24684 ATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720
|| |||| ||||| || || || || ||||||||||
Sbjct 742189 ATATCATCGTATTGGATAGGGAACATGACAAATCTAT 742153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721035964480
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