Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq12 269 3e-67 seq23 217 2e-51 >seq12 Length=1129233 Score = 269 bits (298), Expect = 3e-67 Identities = 749/1142 (66%), Gaps = 20/1142 (2%) Strand=Plus/Minus Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 |||||||||| || || || ||||| ||||||||| ||||||| |||||||| || || | Sbjct 52962 ACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCA 52903 Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900 ||||||| ||||| |||||| |||||| ||| | |||| | ||| | |||||| Sbjct 52902 TGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCTGAGCCT 52843 Query 53901 TTATTATAGATTTGTATCTCTTTTCTC--TTTCGTATAGTGTATACAATCGTTCAAACTC 53958 | | || | | | | | | ||| | ||||| | || || || |||||||| Sbjct 52842 TGACGGTACGTCT--ACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACTC 52785 Query 53959 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 54018 |||||| | || | | || ||| ||| || | | | | ||| | || Sbjct 52784 GTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGACC 52725 Query 54019 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 54078 || | || || || ||||| || | || |||||||| || ||| || | ||| | Sbjct 52724 GTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCACG 52665 Query 54079 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 54138 || | |||||| || || ||||||| | | ||| | ||| | | || || | Sbjct 52664 GGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTGC 52605 Query 54139 ATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 54198 ||||| ||||||| || | | || | || || | |||||| ||||| || || | Sbjct 52604 GTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGAC 52545 Query 54199 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 54258 |||||| || ||||| || |||| | | |||||||||||||||||| || | ||| || Sbjct 52544 GTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGTT 52485 Query 54259 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCC 54318 ||| |||| ||| || ||| ||||||||| || ||| | ||| || || || Sbjct 52484 GGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGCC 52425 Query 54319 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 54378 || | || || || || || || ||| || ||||| |||||||| || ||| ||| Sbjct 52424 GGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAATC 52365 Query 54379 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 54438 ||| |||| || | ||| ||| |||||| || || | || |||||||| || Sbjct 52364 GTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGAA 52305 Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498 || || ||||||||||| || || | || || | ||| || || ||||||| Sbjct 52304 CAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCGA---- 52249 Query 54499 TGAGTCT----ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 54554 ||| ||| ||||| ||||||||| || || || | ||| | || || || | Sbjct 52248 TGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTG 52189 Query 54555 GTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAAC 54614 |||| || | | || || ||| ||| | ||||| ||||| ||||| |||| Sbjct 52188 GTCTCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAAC 52129 Query 54615 CAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTAT 54674 |||| |||||||| ||||| || |||||| |||| | ||||| | | ||| || | Sbjct 52128 CAAAGTAGTTGTAGTTGAAGTCACGGTCGTAATTAATGGCAGAGTTCAACTCATCTTTGT 52069 Query 54675 ATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAG 54734 | | | ||| || ||||| || | || ||| | ||| |||| | Sbjct 52068 GTCTCATCACTGTGTCATAGGTAAGTTGCGAGACCATAGGACATGCCTTCTTGGTTTTCG 52009 Query 54735 GATTGACATAGT---TAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTT 54791 |||| ||||| | | | |||| | || || || ||||| ||||| | | Sbjct 52008 GATT---ATAGTAACTGTAGAGCTCCTGGACAACATCCGAGAAGAGTTTCTTTGTCTGCT 51952 Query 54792 TGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAG 54851 |||| | ||| || | ||| | ||| ||||| | |||||||||||| ||||| |||| Sbjct 51951 TGTGCAAATTCGAAATGGCGAGTCTGGCGGCCAAAATGGCATAATCAGGATGGATCGTAG 51892 Query 54852 TACAAGT-GGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTA 54910 | || || || || | || ||||||| | | || ||||| || || || || || | | Sbjct 51891 T-CATGTACGCAGCGGTCTCAGCTGTCAAATTATCTAATTCAACTGTGGTAACCCCCTCA 51833 Query 54911 TA 54912 || Sbjct 51832 TA 51831 Score = 156 bits (172), Expect = 5e-33 Identities = 604/929 (65%), Gaps = 45/929 (5%) Strand=Plus/Plus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||||| |||| | || ||||| ||||| ||| ||| || || | || || || Sbjct 997091 GATCCCTCATAGCTTTCATATGGCCCTTCTTTCATAGCAAGCTCCATAGATGCTTCCAAG 997150 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC-TTCCAGGCTATC 53499 || || | ||| ||||||| |||||||| | ||| || || | || ||| | || | Sbjct 997151 GCCCCATGATAGATGGTTTGGAAGATCTCCAAATTGAG-TCGTCTGGATTCTCGACTTCC 997209 Query 53500 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 ||| || | || | || |||||| ||||| | ||| ||||| |||| | | || || Sbjct 997210 AAACGGTAACTTCATTTCAAAAAACGCATCTGCAAGTCCCTGAACTCCAACAGCAATTGG 997269 Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619 || || || ||||||||| ||| |||| | |||||| | |||||| | Sbjct 997270 CCTGTGCTTCATATTAGAGACCTCACATTCTTTCAGAGGATATGCTCCGACATCTATGAC 997329 Query 53620 TTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-- 53677 |||||| || |||| |||||| |||| | ||||| | | || |||| Sbjct 997330 CCGATTGAGATTATGAACAAGAACTTTGGTCACAGAATGGAGTTTCCGGAGATTAAATGT 997389 Query 53678 TGTCCATCTATTACAA---------ACAT-----GTTCAATGCAATAGATGCCAGATTAC 53723 || || || || || | |||| | | ||| | | || |||| ||||| Sbjct 997390 TGGCCGTCCATCACTAGCCCTCTCAACATAACTAGGT-AATCCTAACGAGGCCAAATTAC 997448 Query 53724 AAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACA 53781 | ||||| | |||| | || | ||||| | | |||| ||||||||| | Sbjct 997449 ATACGGCAATTTCATC--CTTCGATGAATATTCAACAACCTCACAGCAAAGATTCGAGGA 997506 Query 53782 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 53841 ||||||||||| || || ||||| || ||| ||| || |||||||||||||| | Sbjct 997507 TTTGATGGTTCCCAAGTTCTGTTGGTTCGACTTGGAGTTGCAGGCATCCTTATAAAGCAA 997566 Query 53842 GAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTT 53901 ||| || || || |||||| |||| || || ||| | ||| || ||||||| | Sbjct 997567 GAAAGGAGTTCCTGTTTCAGTCTGTGAAATTAGGATCTTCTCCCACACTTTACGAGCCCT 997626 Query 53902 TA--TTATAGATTTGT-ATCTCTTTTCTCT-TTCGTATAGTGTA-TACAATCGTTCAAAC 53956 | | | || | ||| | | | ||| ||| || | || | | ||||||| Sbjct 997627 CACCTGACGAATATAAGATCCC----CGCGATTCATATT-TGCAGTAGAGTTGTTCAAAG 997681 Query 53957 TCGTCTCCCCAAACATTGTCC---AATCCAGGACATTCATCCGGACACATCAACGACCAC 54013 | ||||||| || ||| ||||||||||| |||| | | || |||| Sbjct 997682 GATTTTCCCCAA-CA--GTCAGATAATCCAGGACAGGTATCCTCCGAAAACAGGCTCCAC 997738 Query 54014 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 54072 || | || | | ||| |||||||| || | ||| || ||||||||||| ||| ||||| Sbjct 997739 ACTTCATCGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGAGC-ATAGAATAG 997797 Query 54073 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 54132 || |||| || || || || || |||||||| | || | ||| |||| || Sbjct 997798 GTCCCTGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAGTCTAAGAATTCCATGAT 997857 Query 54133 ATCAGAATGCCACGGTTCCAAGTATATGGTC--ATAACTCCAGGCCGTTTGTTTCCTCCC 54190 ||| | |||||||||||| | ||| | | ||| | ||||| ||||| || || ||| Sbjct 997858 ATCCGCATGCCACGGTTCTA--GATAGGCACAGATAGCACCAGGTCGTTTATTACCACCC 997915 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 || || | ||| |||||| | || | |||| || ||| || | ||| ||| | ||| Sbjct 997916 TGGTCAACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAATTCCACTTGAT 997975 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCC 54279 | |||||||| || || |||||| |||| Sbjct 997976 TCTCCATTGGTACCCGATATATAGGTTCC 998004 >seq23 Length=838141 Score = 217 bits (240), Expect = 2e-51 Identities = 584/877 (67%), Gaps = 36/877 (4%) Strand=Plus/Minus Query 23865 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTG 23924 |||||||| || || || || || | ||||| || ||||||||||||||| ||||||| Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955 Query 23925 GTAACATTATAGATTCTTTTAAATCCCAATTC-AGAAATCAATCTATCTGCGACA-AACT 23982 ||| | || |||| | | | | || | || || |||||| || || ||| || | Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAA-CAATCTGTCGGC-ACAGAAGT 742897 Query 23983 CCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAG 24042 | | |||| | |||||| ||||||||||| || | || ||| || | || | Sbjct 742896 CAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTC 742837 Query 24043 TA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTG-----TTT 24096 | ||||| |||| ||||||| || || || || || |||||| || ||| Sbjct 742836 TCCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCAT----GATCTTGGTGATGATTTT 742782 Query 24097 CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGAC 24156 ||| | | || || | ||||| || | | || ||||||||| |||| || Sbjct 742781 CTT-ATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723 Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 | |||||||| | || | |||||| || || || || || ||||| | || | ||| | Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| |||| ||||||||| || || ||||| | ||||| | || || |||| Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603 Query 24277 CAATAAGTCTTTCTCCATAACCGGC------GCTGTCATGTATCCACTTTTGAGCCCAAT 24330 | | | ||||||| | || || ||||| || ||||| ||||||| Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGT--TG-ATCCAACGAAGAGCCCATA 742546 Query 24331 CGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCAT 24390 ||||| | || | || || || || || |||||||| | || | ||| | Sbjct 742545 ATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCT 742486 Query 24391 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 24450 | ||||| | || || || |||| ||| ||| ||| | || ||||| ||||| || | Sbjct 742485 TCTTATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCCA 742426 Query 24451 TGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC-TTCTATACAAAAT 24509 || || ||||||||||| |||||||| | | ||| || |||| | || Sbjct 742425 CCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAA-- 742368 Query 24510 CGTTCTG--CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 ||| || ||||| |||| || || || ||| ||| ||||| || ||||| ||| Sbjct 742367 -GTTTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACAC 742309 Query 24568 GTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCAATCATTGATATCTTTA 24623 || || |||||| |||| | ||| ||| || ||||| ||| | ||| || Sbjct 742308 GTGCGATGAAATATCTTTCAT-TGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTT 742250 Query 24624 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 24683 || | ||| | |||||| | ||||| || ||||| || ||||| || ||||| | ||| Sbjct 742249 GAGAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAA 742190 Query 24684 ATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 || |||| ||||| || || || || |||||||||| Sbjct 742189 ATATCATCGTATTGGATAGGGAACATGACAAATCTAT 742153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721035964480