Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq45 118 2e-21
seq15 114 2e-20
seq1 102 1e-16
>seq45
Length=579175
Score = 118 bits (130), Expect = 2e-21
Identities = 166/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | ||||| | || || || || || || | || | || |
Sbjct 355110 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTC 355051
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | || ||||| ||||||||||| || || || ||||| |||||
Sbjct 355050 TGATACCATTGACAATGTCAAGCAGAAGATTCAAGATAAGGAGGGAATCCCACCAGATCA 354991
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| || | || ||||| || || ||||| ||||| | |||| || || || ||
Sbjct 354990 GCAGAGATTGATCTTTGCTGGTAAGCAATTGGAGGACGGCAGAACTTTGTCCGACTACAA 354931
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
|||||||| |||||||| ||||| |||||| | | || ||||||||||||
Sbjct 354930 CATTCAAAAGGAATCAACATTGCACTTGGTTCTCAGATTGAGAGGTGGTATTA 354878
>seq15
Length=115448
Score = 114 bits (126), Expect = 2e-20
Identities = 167/235 (71%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | |||||| ||||||||||||| || || | || | ||| |
Sbjct 245 ATGCAGATTTTCGTCAAGACATTAACAGGCAAAACCATCACCTTGGAAGTCGAATCTTCA 304
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||||| || || ||||||||||||||||| || ||||||||
Sbjct 305 GACACGATCGATAACGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 364
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || | || ||||| || || || ||||| ||| || ||||| | || || |||
Sbjct 365 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 424
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772
|| || || || || ||| | || ||||| || | || | |||||||| ||||
Sbjct 425 ATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGGTTGAGGGGTGGTATGTAAA 479
Score = 113 bits (124), Expect = 7e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | |||||| | || || || || || || | || | || | |
Sbjct 17 ATGCAGATTTTCGTCAAGACATTGACTGGTAAGACCATCACCTTGGAAGTCGAGTCTTCT 76
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || |||| | ||||| || || ||||||||||||||||| || ||||||||
Sbjct 77 GATACGATCGATAATGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 136
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || | || ||||| || || || ||||| ||| || ||||| | || || |||
Sbjct 137 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 196
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || ||| | || |||||||| | || ||||||||||
Sbjct 197 ATCCAGAAGGAGTCTACTCTTCACTTGGTTTTGAGATTGAGAGGTGGTAT 246
>seq1
Length=1746572
Score = 102 bits (112), Expect = 1e-16
Identities = 164/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| | || || || || || || | ||| |||| | |
Sbjct 814058 ATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCTTCT 813999
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || ||||| || ||||| || || || || |||||||||||
Sbjct 813998 GACACTATTGACAATGTCAAGCAGAAGATCCAAGACAAGGAGGGAATTCCACCTGATCAG 813939
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || | || ||||| || || || || |||||| | ||||||| ||| || ||
Sbjct 813938 CAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACATTGTCAGACTACAAC 813879
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| || || ||||| || ||||| || || || | || |||||||| ||| ||
Sbjct 813878 ATCCAGAAGGAATCCACCTTGCACTTAGTCTTGAGATTGAGAGGTGGTGGTAAGAA 813823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755455282316800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |