Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq23 194 2e-44 >seq23 Length=838141 Score = 194 bits (214), Expect = 2e-44 Identities = 562/859 (65%), Gaps = 7/859 (1%) Strand=Plus/Minus Query 15958 AACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAA 16017 ||| |||||||| ||||| || || ||||| | ||||| || |||||||| ||||| || Sbjct 743021 AACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAA 742962 Query 16018 AGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCAC 16077 |||||| | | ||| ||| ||||| || | | || ||||| || || || Sbjct 742961 TGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGC-AC 742903 Query 16078 A-AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTG 16136 | || || | ||| || | ||| | |||||| ||||| || | | |||||| | || Sbjct 742902 AGAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATG 742843 Query 16137 CTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACAC 16196 | ||| | | ||| | ||||| |||| || |||||| | || || | | | | Sbjct 742842 CATCTCTCCAGAAAGTCTTTTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTT 742783 Query 16197 TATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATC 16256 | || ||||||| | || || || | || || || ||||| ||| || | Sbjct 742782 TCTTATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723 Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 ||||||| || | || | ||||| || || |||||||||||||| | |||| || | Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | |||||| || || ||||||||||| || ||||| | |||||| | ||||| || | Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603 Query 16377 CAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttg 16436 | ||||||| || |||| | || || || | ||||| |||||| || Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATG 742543 Query 16437 ctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGC 16496 | |||| |||| | || | || || ||||||||||| |||| ||| || Sbjct 742542 CCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCT 742483 Query 16497 TATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTG 16556 ||||| | || || || | | | | ||| | || ||||| || ||||||| Sbjct 742482 TATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCCACCA 742423 Query 16557 CTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC-TTCAGAGTAAAACCTT 16615 ||||| || || || ||| ||||| || | | || || ||| | || || || Sbjct 742422 TGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGT-GAAGTTT 742364 Query 16616 TCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTA 16675 | || || || | ||| || ||||| || ||||| || || | | || Sbjct 742363 TGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGCG 742304 Query 16676 ATAAAAtttttttCGTTATCTGAAAG---TTTTAACCAGTCAGAAAAATCTTTTGATAAA 16732 || |||| | |||| || | ||| || |||||||| || ||| ||||| | | Sbjct 742303 ATGAAATATCTTTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGAGAGA 742244 Query 16733 TCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCT 16792 |||| |||||| ||||||| ||||| || ||||||| || ||||| | ||| || || Sbjct 742243 TCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAATATCA 742184 Query 16793 TCGTAAACAATAGGAAACA 16811 ||||| ||||| |||| Sbjct 742183 TCGTATTGGATAGGGAACA 742165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511560613600