Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq23 214 2e-50 >seq23 Length=838141 Score = 214 bits (236), Expect = 2e-50 Identities = 578/873 (66%), Gaps = 15/873 (2%) Strand=Plus/Minus Query 13927 AACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAA 13986 ||| || ||||| |||||||| || || || ||| ||| || |||||||| ||||| || Sbjct 743021 AACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAA 742962 Query 13987 TGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAAT 14046 ||||||||| | | | ||||| || || ||||| | || ||||| || ||| Sbjct 742961 TGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGCACA 742902 Query 14047 GAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 14106 ||| |||| ||||||| |||| | ||||||||||||||| | || ||||| | | Sbjct 742901 GAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGC 742842 Query 14107 AT-TGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTT 14165 || | | ||| || ||||| ||| |||||| || | || || | || || |||| Sbjct 742841 ATCTCTCCAGAAAGTC-TTTTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTT 742783 Query 14166 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 14225 ||| |||||| | ||| | ||| || | || || || ||||| ||| | | Sbjct 742782 TCTTATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723 Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 | || ||||| | ||||||||||| || || || | ||||||||||| |||| || | Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| |||||| || || || ||||| ||||| ||||| | || || | || || || | Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | |||| |||| | | ||| | ||| | ||||| ||||||| | Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATG 742543 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAG 14465 |||| ||||| || |||||||| ||||||||||| | || || || Sbjct 742542 CCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCT 742483 Query 14466 TACTTGAAATGTATGTATCAA-TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14524 || || | ||| || |||| ||| || ||| | ||||| || ||||| |||| Sbjct 742482 TATCTGTCACGTAGGTTTCAAGCAAGAGAG-AATAGGTCTCAGAATGGATGTTCTCCACC 742424 Query 14525 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC-CTCTGAGTAAAATCT 14583 ||||| || || || || ||||| |||| | || || |||| || || | | Sbjct 742423 ATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAGT-T 742365 Query 14584 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14643 || |||||| |||| ||| ||||||||| || ||||| || ||||| | | Sbjct 742364 TTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGC 742305 Query 14644 AATAAAGTATTGCTCTTCATTG---CTGAG---TTTTTTCCAATCGGCTAAATCCTTAGA 14697 || || ||| || ||||||| | || || ||||| || | | |||||| || Sbjct 742304 GATGAAATAT--CT-TTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGA 742248 Query 14698 AAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATAT 14757 ||||| | || || | ||||| ||| || |||| || || ||||| ||| || Sbjct 742247 GAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAAT 742188 Query 14758 TTCTTTATATAATATAGGAAAAACTACAAATCT 14790 || | ||| ||||| || | |||||||| Sbjct 742187 ATCATCGTATTGGATAGGGAACATGACAAATCT 742155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345141771680