Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12 291 1e-73 seq23 244 1e-59 >seq12 Length=1129233 Score = 291 bits (322), Expect = 1e-73 Identities = 751/1138 (66%), Gaps = 12/1138 (1%) Strand=Plus/Minus Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 ||||||| || || || || ||||| ||||||||| ||||||| |||||||| || || | Sbjct 52962 ACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCA 52903 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCC 63137 ||||||||||||| |||||| |||| | ||| | |||| | ||| | | || ||||| Sbjct 52902 TGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCT-GAGCC 52844 Query 63138 TTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCG 63197 || | || | | | | || || ||||| | || || || || |||||| Sbjct 52843 TTGACGGTACGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACTCG 52784 Query 63198 TCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63257 ||||| | || | | | ||| ||| || | | | | ||| | ||| Sbjct 52783 TCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGACCG 52724 Query 63258 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTT 63317 | | || || || ||||| || | || |||||||| || ||| || | ||| | Sbjct 52723 TTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCACGG 52664 Query 63318 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63377 | | |||||| || || ||||||| | | ||| | ||| | | || || | Sbjct 52663 GCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTGCG 52604 Query 63378 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63437 ||||| ||||||| || | || || | || || | |||||| ||||| || || | | Sbjct 52603 TGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGACG 52544 Query 63438 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63497 ||||| || ||||| || |||| | | ||||||||||||||| ||||| |||| ||| Sbjct 52543 TATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGTTG 52484 Query 63498 GTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCT 63557 ||||||| ||| || ||| ||||||||| || ||| | ||| || || || Sbjct 52483 GTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGCCG 52424 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || | || || || || || || ||| || || || ||||||||||| || ||| Sbjct 52423 GCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAATCG 52364 Query 63618 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAAT 63677 || |||| || | ||| ||| |||||| || || | | || |||||||| || Sbjct 52363 TCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGAAC 52304 Query 63678 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63737 || || ||||||||||| || || | || || | ||| || || ||||| | | Sbjct 52303 AAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTC----GAT 52248 Query 63738 GAGTCT----ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 || ||| ||||| ||||||||| || || || | ||| | || || || || Sbjct 52247 GACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTGG 52188 Query 63794 TCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63853 ||| || ||| ||| || ||| |||| | ||||| ||||| ||||| ||||| Sbjct 52187 TCTCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAACC 52128 Query 63854 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATA 63913 ||| |||||||| ||||| || |||||| |||| | || || | || ||| || | Sbjct 52127 AAAGTAGTTGTAGTTGAAGTCACGGTCGTAATTAATGGCAGAGTTCAACTCATCTTTGTG 52068 Query 63914 TTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGG 63973 | | | ||| | || ||||| || | || ||| | ||| |||| || Sbjct 52067 TCTCATCACTGTGTCATAGGTAAGTTGCGAGACCATAGGACATGCCTTCTTGGTTTTCGG 52008 Query 63974 ATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 64033 |||| || || | | |||| | || || || ||||| ||||| | |||||| Sbjct 52007 ATTATAGTAACTGTAGAGCTCCTGGACAACATCCGAGAAGAGTTTCTTTGTCTGCTTGTG 51948 Query 64034 TAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACA 64093 | ||| || ||||| | ||||||||| | |||||||||||| ||||| ||||| || Sbjct 51947 CAAATTCGAAATGGCGAGTCTGGCGGCCAAAATGGCATAATCAGGATGGATCGTAGT-CA 51889 Query 64094 AGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATA 64150 || || || | || |||| || | | || ||||| || || || || || | ||| Sbjct 51888 TGTACGCAGCGGTCTCAGCTGTCAAATTATCTAATTCAACTGTGGTAACCCCCTCATA 51831 Score = 123 bits (136), Expect = 3e-23 Identities = 589/920 (64%), Gaps = 37/920 (4%) Strand=Plus/Plus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 ||||| |||| | |||||||| ||||| ||| ||| || | | || || || Sbjct 997091 GATCCCTCATAGCTTTCATATGGCCCTTCTTTCATAGCAAGCTCCATAGATGCTTCCAAG 997150 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGC-TTCCGGGCTATC 62737 || || | ||| ||||||| ||||||| | ||| || || | || ||| | || | Sbjct 997151 GCCCCATGATAGATGGTTTGGAAGATCTCCAAATTGAG-TCGTCTGGATTCTCGACTTCC 997209 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||| || | || | || |||||| || || | ||| ||||| |||| | | || || Sbjct 997210 AAACGGTAACTTCATTTCAAAAAACGCATCTGCAAGTCCCTGAACTCCAACAGCAATTGG 997269 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || || ||||||||| ||| |||| | |||||| | |||||| | Sbjct 997270 CCTGTGCTTCATATTAGAGACCTCACATTCTTTCAGAGGATATGCTCCGACATCTATGAC 997329 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC- 62916 ||||||||| |||| |||||| |||| | ||||| | | || |||| Sbjct 997330 CCGATTGAGATTATGAACAAGAACTTTGGTCACAGAATGGAGTTTCCGGAGATTAAATGT 997389 Query 62917 -GCCCATCTATTACAA---------ACAT-----GTTCAATGCAACAGATGCCAGATTAC 62961 | || || || || | |||| | | ||| | | || |||| ||||| Sbjct 997390 TGGCCGTCCATCACTAGCCCTCTCAACATAACTAGGT-AATCCTAACGAGGCCAAATTAC 997448 Query 62962 ACACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACA 63019 | ||||| | |||| | || | ||||| | | |||| ||||||||| | Sbjct 997449 ATACGGCAATTTCATC--CTTCGATGAATATTCAACAACCTCACAGCAAAGATTCGAGGA 997506 Query 63020 CTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 63079 ||||| ||||| || || ||||| || ||| ||| || |||||||||||||| | Sbjct 997507 TTTGATGGTTCCCAAGTTCTGTTGGTTCGACTTGGAGTTGCAGGCATCCTTATAAAGCAA 997566 Query 63080 GAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 63139 ||| ||||| || |||||| |||| || || ||| | ||| || |||||| | Sbjct 997567 GAAAGGAGTTCCTGTTTCAGTCTGTGAAATTAGGATCTTCTCCCACACTTTACGAGCCCT 997626 Query 63140 TATTATA-GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198 | | || | | ||| | || | ||| || | | |||| || | Sbjct 997627 CACCTGACGAATATAAGATCCCCGCGATT-CATATTTGCAGTAGAGTTGTTCAAAGGATT 997685 Query 63199 CTCCCCAAACATTGTCC---AATCTAGGACATTCATCCGGACACATCAACGACCACTCTC 63255 ||||||| || ||| |||| |||||| |||| | | || |||| || Sbjct 997686 TTCCCCAA-CA--GTCAGATAATCCAGGACAGGTATCCTCCGAAAACAGGCTCCACACTT 997742 Query 63256 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCT 63314 | || | | ||| |||||||| || | ||| || ||||||||||| ||| ||||| || Sbjct 997743 CATCGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGAGC-ATAGAATAGGTCC 997801 Query 63315 CTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 63374 || | || || || || || |||||||| | || | ||| |||| ||||| Sbjct 997802 CTGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAGTCTAAGAATTCCATGATATCC 997861 Query 63375 GAATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63432 | |||||||||||| | ||| | | ||| | ||||| ||||| || || ||||| | Sbjct 997862 GCATGCCACGGTTCTA--GATAGGCACAGATAGCACCAGGTCGTTTATTACCACCCTGGT 997919 Query 63433 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63492 | | ||| |||||| | || | |||| || ||| || | ||| || ||||| | Sbjct 997920 CAACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAATTCCACTTGATTCTC 997979 Query 63493 CATTGGTACCGGAGATATAG 63512 |||||||||| || |||||| Sbjct 997980 CATTGGTACCCGATATATAG 997999 >seq23 Length=838141 Score = 244 bits (270), Expect = 1e-59 Identities = 584/871 (67%), Gaps = 24/871 (3%) Strand=Plus/Minus Query 33312 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33371 |||||||| || || || ||||| ||||||| || |||||||||||||| || ||||| Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955 Query 33372 GTAACATTGTAAAtttttttAAATCCCAATTC-AGAAATCAATCTATCTGCGACGAATTC 33430 ||| | ||||| | ||| | | || | || || |||||| || || ||| || Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAA-CAATCTGTCGGCACAGAAGTC 742896 Query 33431 TATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGT 33490 | |||| | |||||| ||||||||||| || | ||| ||| || | || | | Sbjct 742895 AACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTCT 742836 Query 33491 A-AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCAC 33549 ||||| |||| |||||| || || | || || || | | | ||| | | Sbjct 742835 CCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTTTCTTAT 742777 Query 33550 TCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGT 33609 | || || ||| ||||| || | | || ||||||||| || | ||| |||| Sbjct 742776 TAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAACCTTCGT 742717 Query 33610 CTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 33669 |||| | || | |||||| || || || || || ||||| | || | ||| || |||| Sbjct 742716 CTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCTTTAGCC 742657 Query 33670 AAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAA 33729 |||| |||| || ||||| ||||| ||||||| ||||| | || || ||||| | | Sbjct 742656 AAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGGCGACCA 742597 Query 33730 GTCTCTCTCCATAACCGGC------GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 33783 ||| ||| | || || ||||| || ||||| ||||||| |||| Sbjct 742596 ATCTTTCTGCGTATAGTGCATCCTTGCTGT--TG-ATCCAACGAAGAGCCCATAATGCCT 742540 Query 33784 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTAT 33843 | | || | || || ||||| ||||||||||| | || | ||| || ||| Sbjct 742539 TTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCTTAT 742480 Query 33844 CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33903 || | || || || || | ||| ||| ||| | || ||||| ||||| || | | Sbjct 742479 CTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCCACCATGA 742420 Query 33904 TCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC-TTCTGTACAAAATCGTTCT 33962 |||| ||||||||||| |||||||| | | ||| || |||||| || ||| | Sbjct 742419 TCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAA---GTTTT 742363 Query 33963 G--CTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTA 34020 | ||||| |||| || || |||||| ||| ||||| || ||||| ||| || | Sbjct 742362 GAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGCGA 742303 Query 34021 TAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCAATCATTGATATCTTTAGATATA 34076 | |||||| |||| | ||| ||| || ||||| ||| | ||| || || | | Sbjct 742302 TGAAATATCTTTCAT-TGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGAGAGA 742244 Query 34077 TCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 34136 || | |||||| | ||||| || ||||| || ||||| || ||||| | ||| || ||| Sbjct 742243 TCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAATATCA 742184 Query 34137 TGATATTGGATTGGGAAAATAACAAATCTAT 34167 | |||||||| ||||| || |||||||||| Sbjct 742183 TCGTATTGGATAGGGAACATGACAAATCTAT 742153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817001673280