Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq23 154 1e-32
seq12 109 5e-19
>seq23
Length=838141
Score = 154 bits (170), Expect = 1e-32
Identities = 295/432 (68%), Gaps = 2/432 (0%)
Strand=Plus/Minus
Query 11362 TTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATA 11421
|||||| || || ||||| || | | ||| || | ||||| || || ||||| |
Sbjct 743012 TTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATT-TG 742954
Query 11422 TA-CATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTA 11480
|| | ||| ||||||| || || |||| ||| ||||| || || ||| || |
Sbjct 742953 TAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGCACAGAAGTCAA 742894
Query 11481 TATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCA 11540
||| ||| |||| | | |||||||||||| | ||| || || | ||| || ||
Sbjct 742893 CATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTCTCC 742834
Query 11541 AAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATG 11600
| || |||||| |||| || || ||| | || ||| || || | || |||| |
Sbjct 742833 AGAAAGTCTTTTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTTTCTTATTAG 742774
Query 11601 GTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTC 11660
| || ||| ||||| || | || || || ||||| |||||||||||||||||
Sbjct 742773 GAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAACCTTCGTCTC 742714
Query 11661 TACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAA 11720
| | || ||||| || || || || | || |||||||| |||| || |||| |||||
Sbjct 742713 TGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCTTTAGCCAAA 742654
Query 11721 ATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTC 11780
| || || ||||||||||| || ||||| | || || | ||| || || || || | ||
Sbjct 742653 AGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGGCGACCAATC 742594
Query 11781 TTTCTCCATATA 11792
||||| | ||||
Sbjct 742593 TTTCTGCGTATA 742582
>seq12
Length=1129233
Score = 109 bits (120), Expect = 5e-19
Identities = 411/642 (64%), Gaps = 2/642 (0%)
Strand=Plus/Minus
Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028
|| ||| |||| |||| | | ||||| ||||| | | | || || || | |||
Sbjct 52762 CCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGACCGTTCTGCTCAACACGCTTCATG 52703
Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088
|| || || || | ||||| || | || ||||| || | ||| || || ||
Sbjct 52702 AACAAGTCGGGAATCCATAGGGCTGGGAACAAATCACGGGCACGGATTTCCTCCTTACCA 52643
Query 38089 ACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATC 38148
||||||||| | | |||||||| || || |||||||||||||| ||||| |
Sbjct 52642 TGATTCTTTCTGATATCAATGAAATCGAAGATGTCTGCGTGCCATGGTTCCATATACACT 52583
Query 38149 GACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATAT 38208
| || || ||||||||||| | |||||| || | | ||||| | ||||| || |
Sbjct 52582 GCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAA 52523
Query 38209 ATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCC 38268
| | | ||| || | |||||||| || | ||||| |||||| || |||| ||
Sbjct 52522 ACACGAATCATTGGAATAATACCATTTGAGGTACCGTTGGTACCGGCGATGTAAGAGCCA 52463
Query 38269 TTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328
| || || | || || || || || || || || || || || || ||
Sbjct 52462 GTGGCACGAACGTTGTGAATATGCATACCAATACCGCCGGCGGTCTTCGAAATCAAGGCA 52403
Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388
|| | ||| || ||||| | || ||||| ||| || ||||| || | | | |||
Sbjct 52402 CACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAATCGTCCTTCATCGCAACCAAAAAG 52343
Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448
|| |||||| || || ||| || || || || || || || ||||| || || ||
Sbjct 52342 CAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGAACAAAGTTGGAGAAGCGTGGGTG 52283
Query 38449 AACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT-CTATATCACCGCCGTG 38507
|| | || |||| ||||| || || || || || | ||||| | || ||
Sbjct 52282 AAATAACGCTCGGACATTAGGTTATAGGTCTCGATGAC-TCTTGGGATATCGTCACCATG 52224
Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTG 38567
||| || | | || ||||| | || |||||||||||| ||| | |||| |||
Sbjct 52223 AATTCCGACGGCAACTCTCATAATCAGATGTTGTGGTCTCTCTGCAACTTTACCATTGAT 52164
Query 38568 TTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609
| | | |||||| || || || ||||| | ||||| ||
Sbjct 52163 TCTCAATAGATAGGAACGCTCCAAGGTTTTGAAACCAAAGTA 52122
Score = 91.5 bits (100), Expect = 1e-13
Identities = 357/558 (64%), Gaps = 5/558 (1%)
Strand=Plus/Minus
Query 36835 TAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTT 36894
|| ||||| ||||| ||||||||| |||| ||||| || ||||| |||| |||
Sbjct 53911 TAGTACATACCAGTCTTTAGCCCCTTCTTCCAGCCGTAGAAGTGCATCGAAGTCAATTTA 53852
Query 36895 GCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCT 36954
| |||||| | || | || |||| || || ||||| | | ||||||
Sbjct 53851 CCCATGGTAGGAGCCTGTAAGTGGATGTTCATCGACTGCGACTGATCGAGGTAGGCACCT 53792
Query 36955 CTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATT 37014
||||| |||||||| || | ||| ||||| | | |||||| || || || |
Sbjct 53791 CTGTCAGCTGCCATATCGATGATAGCCTTTTGTGGGAGCTCCCAGACAGTACGGTAGAGC 53732
Query 37015 TGTTTTATATTATCTGGTAAATCT---AAATGTTGAATAGAACCATTAT-GTAACACAAT 37070
| |||||| |||||||| | | | |||| || || ||||| || | || | | |||
Sbjct 53731 TTTTTTATCTTATCTGGAACGTTTGGCAAATTCTGGATCGAACCGTTGTCGTGA-ATAAT 53673
Query 37071 TGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGG 37130
||||| ||| ||| |||||| ||| || | | |||||||| | || ||
Sbjct 53672 AAAGTTCTTCATGGCATCATTCCAGATACCCATATCGACAAAGTCTCTCAACATGTAAGG 53613
Query 37131 ATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGG 37190
||| || | ||| || || || | | |||||||| || || || || | ||
Sbjct 53612 ATTGACGATCTGGAACTCACCTGCGAGAACTCTTCTCTGGTAGATGTTCGAGGTGAAGGG 53553
Query 37191 TTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTAT 37250
|||| | |||| |||| | | || || || ||||| || || ||||||||||| |
Sbjct 53552 CTCAAAGCACTCGTTATAGCCCATAATCTGGGAAGTAGAAGCTGTTGGCATTGGTGCCAC 53493
Query 37251 TAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCA 37310
| || |||||||| || | | ||| | || | || |||||||||
Sbjct 53492 CAAGAGCGAGTTTCTCAAACCGTTCTTGGCAATCTTGGACTTCAAAGAATCCCAATCCCA 53433
Query 37311 TAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGA 37370
| ||| || || ||||| ||| | ||| |||||| | || || || |||||
Sbjct 53432 AAGATCGGTAGGCTTCTTACCCCATAAATCGAATTGTAATAAGCCCTTGGATGCAGGAGA 53373
Query 37371 ATCGTTATATGTCTCATA 37388
| | | ||| |||||||
Sbjct 53372 ACCCTCATAGCTCTCATA 53355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468524354901440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |