Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq23 154 1e-32 seq12 109 5e-19 >seq23 Length=838141 Score = 154 bits (170), Expect = 1e-32 Identities = 295/432 (68%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 11362 TTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATA 11421 |||||| || || ||||| || | | ||| || | ||||| || || ||||| | Sbjct 743012 TTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATT-TG 742954 Query 11422 TA-CATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTA 11480 || | ||| ||||||| || || |||| ||| ||||| || || ||| || | Sbjct 742953 TAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGCACAGAAGTCAA 742894 Query 11481 TATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCA 11540 ||| ||| |||| | | |||||||||||| | ||| || || | ||| || || Sbjct 742893 CATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTCTCC 742834 Query 11541 AAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATG 11600 | || |||||| |||| || || ||| | || ||| || || | || |||| | Sbjct 742833 AGAAAGTCTTTTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTTTCTTATTAG 742774 Query 11601 GTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTC 11660 | || ||| ||||| || | || || || ||||| ||||||||||||||||| Sbjct 742773 GAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAACCTTCGTCTC 742714 Query 11661 TACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAA 11720 | | || ||||| || || || || | || |||||||| |||| || |||| ||||| Sbjct 742713 TGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCTTTAGCCAAA 742654 Query 11721 ATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTC 11780 | || || ||||||||||| || ||||| | || || | ||| || || || || | || Sbjct 742653 AGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGGCGACCAATC 742594 Query 11781 TTTCTCCATATA 11792 ||||| | |||| Sbjct 742593 TTTCTGCGTATA 742582 >seq12 Length=1129233 Score = 109 bits (120), Expect = 5e-19 Identities = 411/642 (64%), Gaps = 2/642 (0%) Strand=Plus/Minus Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028 || ||| |||| |||| | | ||||| ||||| | | | || || || | ||| Sbjct 52762 CCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGACCGTTCTGCTCAACACGCTTCATG 52703 Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088 || || || || | ||||| || | || ||||| || | ||| || || || Sbjct 52702 AACAAGTCGGGAATCCATAGGGCTGGGAACAAATCACGGGCACGGATTTCCTCCTTACCA 52643 Query 38089 ACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATC 38148 ||||||||| | | |||||||| || || |||||||||||||| ||||| | Sbjct 52642 TGATTCTTTCTGATATCAATGAAATCGAAGATGTCTGCGTGCCATGGTTCCATATACACT 52583 Query 38149 GACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATAT 38208 | || || ||||||||||| | |||||| || | | ||||| | ||||| || | Sbjct 52582 GCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAA 52523 Query 38209 ATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCC 38268 | | | ||| || | |||||||| || | ||||| |||||| || |||| || Sbjct 52522 ACACGAATCATTGGAATAATACCATTTGAGGTACCGTTGGTACCGGCGATGTAAGAGCCA 52463 Query 38269 TTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328 | || || | || || || || || || || || || || || || || Sbjct 52462 GTGGCACGAACGTTGTGAATATGCATACCAATACCGCCGGCGGTCTTCGAAATCAAGGCA 52403 Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388 || | ||| || ||||| | || ||||| ||| || ||||| || | | | ||| Sbjct 52402 CACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAATCGTCCTTCATCGCAACCAAAAAG 52343 Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448 || |||||| || || ||| || || || || || || || ||||| || || || Sbjct 52342 CAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGAACAAAGTTGGAGAAGCGTGGGTG 52283 Query 38449 AACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT-CTATATCACCGCCGTG 38507 || | || |||| ||||| || || || || || | ||||| | || || Sbjct 52282 AAATAACGCTCGGACATTAGGTTATAGGTCTCGATGAC-TCTTGGGATATCGTCACCATG 52224 Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTG 38567 ||| || | | || ||||| | || |||||||||||| ||| | |||| ||| Sbjct 52223 AATTCCGACGGCAACTCTCATAATCAGATGTTGTGGTCTCTCTGCAACTTTACCATTGAT 52164 Query 38568 TTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 | | | |||||| || || || ||||| | ||||| || Sbjct 52163 TCTCAATAGATAGGAACGCTCCAAGGTTTTGAAACCAAAGTA 52122 Score = 91.5 bits (100), Expect = 1e-13 Identities = 357/558 (64%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 36835 TAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTT 36894 || ||||| ||||| ||||||||| |||| ||||| || ||||| |||| ||| Sbjct 53911 TAGTACATACCAGTCTTTAGCCCCTTCTTCCAGCCGTAGAAGTGCATCGAAGTCAATTTA 53852 Query 36895 GCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCT 36954 | |||||| | || | || |||| || || ||||| | | |||||| Sbjct 53851 CCCATGGTAGGAGCCTGTAAGTGGATGTTCATCGACTGCGACTGATCGAGGTAGGCACCT 53792 Query 36955 CTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATT 37014 ||||| |||||||| || | ||| ||||| | | |||||| || || || | Sbjct 53791 CTGTCAGCTGCCATATCGATGATAGCCTTTTGTGGGAGCTCCCAGACAGTACGGTAGAGC 53732 Query 37015 TGTTTTATATTATCTGGTAAATCT---AAATGTTGAATAGAACCATTAT-GTAACACAAT 37070 | |||||| |||||||| | | | |||| || || ||||| || | || | | ||| Sbjct 53731 TTTTTTATCTTATCTGGAACGTTTGGCAAATTCTGGATCGAACCGTTGTCGTGA-ATAAT 53673 Query 37071 TGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGG 37130 ||||| ||| ||| |||||| ||| || | | |||||||| | || || Sbjct 53672 AAAGTTCTTCATGGCATCATTCCAGATACCCATATCGACAAAGTCTCTCAACATGTAAGG 53613 Query 37131 ATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGG 37190 ||| || | ||| || || || | | |||||||| || || || || | || Sbjct 53612 ATTGACGATCTGGAACTCACCTGCGAGAACTCTTCTCTGGTAGATGTTCGAGGTGAAGGG 53553 Query 37191 TTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTAT 37250 |||| | |||| |||| | | || || || ||||| || || ||||||||||| | Sbjct 53552 CTCAAAGCACTCGTTATAGCCCATAATCTGGGAAGTAGAAGCTGTTGGCATTGGTGCCAC 53493 Query 37251 TAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCA 37310 | || |||||||| || | | ||| | || | || ||||||||| Sbjct 53492 CAAGAGCGAGTTTCTCAAACCGTTCTTGGCAATCTTGGACTTCAAAGAATCCCAATCCCA 53433 Query 37311 TAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGA 37370 | ||| || || ||||| ||| | ||| |||||| | || || || ||||| Sbjct 53432 AAGATCGGTAGGCTTCTTACCCCATAAATCGAATTGTAATAAGCCCTTGGATGCAGGAGA 53373 Query 37371 ATCGTTATATGTCTCATA 37388 | | | ||| ||||||| Sbjct 53372 ACCCTCATAGCTCTCATA 53355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524354901440