Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq12 273 3e-68 seq23 215 7e-51 >seq12 Length=1129233 Score = 273 bits (302), Expect = 3e-68 Identities = 752/1143 (66%), Gaps = 22/1143 (2%) Strand=Plus/Minus Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 |||||||||| || || || ||||| ||||||||| ||||||| |||||||| || || | Sbjct 52962 ACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCA 52903 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCC 65930 ||||||||||||| |||||| |||| | ||| | |||| | ||| | | || ||||| Sbjct 52902 TGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCT-GAGCC 52844 Query 65931 TTTATTATAGATTTGTATCTCTTTTCTC--TTTCGTATAGTGTATACAATCGTTCGAACT 65988 || | || | | | | | | ||| | ||||| | || || || || |||| Sbjct 52843 TTGACGGTACGTCT--ACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACT 52786 Query 65989 CGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTC 66048 ||||||| | || | | || ||| ||| || | | | | ||| | | Sbjct 52785 CGTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGAC 52726 Query 66049 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTC 66108 ||| | || || || ||||| || | || |||||||| || ||| || ||||| | Sbjct 52725 CGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCAC 52666 Query 66109 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAT 66168 || | |||||| || || ||||||| | | ||| | ||| | | || || Sbjct 52665 GGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTG 52606 Query 66169 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 66228 ||||| ||||||| || | || || | || || | |||||| ||||| || || | Sbjct 52605 CGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGA 52546 Query 66229 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 66288 |||||| || ||||| || |||| | | |||||||||||||||||| || ||||| | Sbjct 52545 CGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGT 52486 Query 66289 TGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCC 66348 |||| |||| ||| || ||| | ||||||| || ||| | ||| || || | Sbjct 52485 TGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGC 52426 Query 66349 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 66408 | || | || || || || || || ||| || ||||| |||||||| || ||| || Sbjct 52425 CGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAAT 52366 Query 66409 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 66468 | ||| |||| || | ||| ||| |||||| || || | || |||||||| | Sbjct 52365 CGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGA 52306 Query 66469 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 66528 | || || ||||||||||| || || | || || | ||| || || ||||| | Sbjct 52305 ACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTC----G 52250 Query 66529 CTGAGTCT----ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 66584 ||| ||| ||||| ||||||||| || || || | ||| | || || || Sbjct 52249 ATGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGT 52190 Query 66585 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 66644 ||||| || | | || || ||| |||| | ||||| ||||| ||||| ||| Sbjct 52189 GGTCTCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAA 52130 Query 66645 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTA 66704 ||||| |||||||| ||||| || |||||| |||| | ||||| | | ||| || Sbjct 52129 CCAAAGTAGTTGTAGTTGAAGTCACGGTCGTAATTAATGGCAGAGTTCAACTCATCTTTG 52070 Query 66705 TATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA 66764 | | | | ||| || ||||| || | || ||| | ||| |||| Sbjct 52069 TGTCTCATCACTGTGTCATAGGTAAGTTGCGAGACCATAGGACATGCCTTCTTGGTTTTC 52010 Query 66765 GGATTGACATAGT---TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCT 66821 ||||| ||||| || | | |||| | || || || ||||| ||||| | Sbjct 52009 GGATT---ATAGTAACTGTAGAGCTCCTGGACAACATCCGAGAAGAGTTTCTTTGTCTGC 51953 Query 66822 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTA 66881 ||||| | ||| || | ||| | ||| ||||| | |||||||||||| ||||| ||| Sbjct 51952 TTGTGCAAATTCGAAATGGCGAGTCTGGCGGCCAAAATGGCATAATCAGGATGGATCGTA 51893 Query 66882 GTACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 66940 || || || || || | || |||| || | | || ||||| || || || || || | Sbjct 51892 GT-CATGTACGCAGCGGTCTCAGCTGTCAAATTATCTAATTCAACTGTGGTAACCCCCTC 51834 Query 66941 ATA 66943 ||| Sbjct 51833 ATA 51831 Score = 134 bits (148), Expect = 2e-26 Identities = 717/1114 (64%), Gaps = 61/1114 (5%) Strand=Plus/Plus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 ||||| |||| | || ||||| ||||| ||| ||| || || | || || || Sbjct 997091 GATCCCTCATAGCTTTCATATGGCCCTTCTTTCATAGCAAGCTCCATAGATGCTTCCAAG 997150 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC-TTCCAGGCTATC 65530 || || | ||| ||||||| |||||||| | ||| || || | || ||| | || | Sbjct 997151 GCCCCATGATAGATGGTTTGGAAGATCTCCAAATTGAG-TCGTCTGGATTCTCGACTTCC 997209 Query 65531 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 65590 ||| || | || | || |||||| ||||| | ||| ||||| |||| | | || || Sbjct 997210 AAACGGTAACTTCATTTCAAAAAACGCATCTGCAAGTCCCTGAACTCCAACAGCAATTGG 997269 Query 65591 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 65650 || || || ||||||||| ||| |||| | |||||| | |||||| | Sbjct 997270 CCTGTGCTTCATATTAGAGACCTCACATTCTTTCAGAGGATATGCTCCGACATCTATGAC 997329 Query 65651 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC- 65709 ||||||||| |||| |||||| |||| | ||||| | | || |||| Sbjct 997330 CCGATTGAGATTATGAACAAGAACTTTGGTCACAGAATGGAGTTTCCGGAGATTAAATGT 997389 Query 65710 -GCTCATCTATTACAA---------ACAT-----GTTCAATGCAACAGATGCCAGATTAC 65754 | | || || || | |||| | | ||| | | || |||| ||||| Sbjct 997390 TGGCCGTCCATCACTAGCCCTCTCAACATAACTAGGT-AATCCTAACGAGGCCAAATTAC 997448 Query 65755 AAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACA 65812 | ||||| | |||| | || | ||||| | | |||| ||||||||| | Sbjct 997449 ATACGGCAATTTCATC--CTTCGATGAATATTCAACAACCTCACAGCAAAGATTCGAGGA 997506 Query 65813 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 65872 ||||||||||| || || ||||| || ||| ||| || |||||||||||||| | Sbjct 997507 TTTGATGGTTCCCAAGTTCTGTTGGTTCGACTTGGAGTTGCAGGCATCCTTATAAAGCAA 997566 Query 65873 GAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 65932 ||| ||||| || |||||| |||| || || ||| | ||| || |||||| | Sbjct 997567 GAAAGGAGTTCCTGTTTCAGTCTGTGAAATTAGGATCTTCTCCCACACTTTACGAGCCCT 997626 Query 65933 TA--TTATAGATTTGT-ATCTCTTTTCTCT-TTCGTATAGTGTA-TACAATCGTTCGAAC 65987 | | | || | ||| | | | ||| ||| || | || | | |||| || Sbjct 997627 CACCTGACGAATATAAGATCCC----CGCGATTCATATT-TGCAGTAGAGTTGTTCAAAG 997681 Query 65988 TCGTCTCCCCAAACATTGTCC---AATCCAGGACATTCATCCGGACACATCAACGACCAC 66044 | ||||||| || ||| ||||||||||| |||| | | || |||| Sbjct 997682 GATTTTCCCCAA-CA--GTCAGATAATCCAGGACAGGTATCCTCCGAAAACAGGCTCCAC 997738 Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAA 66103 || | || | | ||| |||||||| || | ||| || ||||||||||| ||| |||| Sbjct 997739 ACTTCATCGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGAGC-ATAGAATAG 997797 Query 66104 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 66163 || |||| || || || || || |||||||| | || | ||| |||| || Sbjct 997798 GTCCCTGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAGTCTAAGAATTCCATGAT 997857 Query 66164 ATCATAATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCC 66221 ||| |||||||||||| | ||| | | ||| | ||||| ||||| || || ||| Sbjct 997858 ATCCGCATGCCACGGTTCTA--GATAGGCACAGATAGCACCAGGTCGTTTATTACCACCC 997915 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 || || | ||| |||||| | || | |||| || ||| || | ||| ||| | ||| Sbjct 997916 TGGTCAACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAATTCCACTTGAT 997975 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTAC-TAATTGATAGACC 66340 |||||||| || || |||||| |||| ||| | | ||| | ||| || | ||| Sbjct 997976 TCTCCATTGGTACCCGATATATAGGTTCCTGCTGCCCTTACATTGCTTAAATG-CATACC 998034 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCCCT 66399 ||||| || || ||| || || | || ||| | | ||| ||| | |||| || | Sbjct 998035 AATTCCACCGGCAGCTTTCGATATCATAGCACAT-TTGTGAACTGTACGAAAGATCCCAT 998093 Query 66400 CTATACTATCATCC-ATCATGTTAAGTAGAAAACA----GCTAGACATTTGGTGACGACT 66454 ||| | |||||| | ||| || || ||||| | |||| |||| || ||| Sbjct 998094 CTAGAGAGTCATCCTCTAATG-AAACCAGGAAACATGACGATAGA---TTGGGGA--ACT 998147 Query 66455 -AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 ||| |||||||| || | ||| || || || || Sbjct 998148 CAGTACCCGCATTGAAAAGGGTGGGTGATGCATG 998181 >seq23 Length=838141 Score = 215 bits (238), Expect = 7e-51 Identities = 581/873 (67%), Gaps = 28/873 (3%) Strand=Plus/Minus Query 35888 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG 35947 |||||||| || || || || || | ||||| || ||||||||||||||||||||||| Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955 Query 35948 ATAACATTATAAAtttttttAAATCCCAATTC-AGAAATCAATCTATCTGCGACA-AATT 36005 || | || || | ||| | | || | || || |||||| || || ||| || | Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAA-CAATCTGTCGGC-ACAGAAGT 742897 Query 36006 CTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAG 36065 | | |||| | |||||| ||||||||||| || | || ||| || | || | Sbjct 742896 CAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTC 742837 Query 36066 TA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTG-----TTT 36119 | ||||| |||| ||||||| || || || || || ||| || || ||| Sbjct 742836 TCCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCAT----GATCTTGGTGATGATTTT 742782 Query 36120 CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGAC 36179 ||| | | || || | ||||| || | | || ||||||||| |||| || Sbjct 742781 CTT-ATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723 Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 | |||||||| | || | |||||| || || || || || ||||| | || | ||| | Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| |||| ||||||||| || || ||||| | ||||| | || || |||| Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603 Query 36300 CAATAAGTCTCTCTCCATAACCGGCA-CTGTCATGT--ATCCACTTTTGAGCCCAATCGG 36356 | | | ||| ||| | || ||| | | ||| ||||| ||||||| | Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATG 742543 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 36416 |||| | || | || || || || || |||||||| | || | ||| || Sbjct 742542 CCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCT 742483 Query 36417 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 36476 ||||| | || || || |||| ||| ||| ||| | || ||||| ||||| || | Sbjct 742482 TATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCCACCA 742423 Query 36477 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC-TTCTGTACAAAATCGT 36535 || || ||||||||||| |||||||| | | ||| || |||||| || || Sbjct 742422 TGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAA---GT 742366 Query 36536 TCTG--CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 36593 | || ||||| |||| || || || ||| ||| ||||| || ||||| ||| || Sbjct 742365 TTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTG 742306 Query 36594 TTATAAAATATTTTTCGTTTGGTGTTAG---TTTATTCCAATCATTGATATCTTTAGATA 36650 || |||||| |||| || | | || || ||||| ||| | ||| || || | Sbjct 742305 CGATGAAATATCTTTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGAGA 742246 Query 36651 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT 36710 ||| | |||||| | ||||| || ||||| || ||||| || ||||| | ||| || | Sbjct 742245 GATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAATAT 742186 Query 36711 CATGATATTGAATTGGAAAAATAACAAATCTAT 36743 ||| ||||| || || || || |||||||||| Sbjct 742185 CATCGTATTGGATAGGGAACATGACAAATCTAT 742153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172174735840