Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12 293 3e-74 seq23 253 3e-62 >seq12 Length=1129233 Score = 293 bits (324), Expect = 3e-74 Identities = 751/1136 (66%), Gaps = 8/1136 (1%) Strand=Plus/Minus Query 79691 ACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 79750 |||| ||||| || || || ||||| ||||||||| ||||||| |||||||| || || | Sbjct 52962 ACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCA 52903 Query 79751 TGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCC 79809 |||| |||||||| |||||| |||| | ||| | |||| | ||| | | || ||||| Sbjct 52902 TGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCT-GAGCC 52844 Query 79810 TTTATTATAGACTTGTATCTCTTTTCTC--TTTCGTATTGTGTATATAATCGTTCGAACT 79867 || | || | | || | | | ||| | ||||| | || ||||| || |||| Sbjct 52843 TTGACGGTA--CGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACT 52786 Query 79868 CGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTC 79927 ||||||| | || || | || ||| |||| || | | | | ||| | | Sbjct 52785 CGTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGAC 52726 Query 79928 CATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 79987 | | | || || || ||||| || | || |||||||| || ||| || | ||| | Sbjct 52725 CGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCAC 52666 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 80047 || | ||||| || || ||||||| | | ||| | ||| | | || || | Sbjct 52665 GGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTG 52606 Query 80048 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTA 80107 ||||| ||||||| || | || || | || |||| |||||| ||||| || || | Sbjct 52605 CGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGA 52546 Query 80108 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 80167 |||||| || ||||| || |||| | | |||||||||||||||||| || ||||| | Sbjct 52545 CGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGT 52486 Query 80168 TGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 80227 |||| |||| ||| || ||| ||||||||| || ||| | ||| || || | Sbjct 52485 TGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGC 52426 Query 80228 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTAT 80287 | || | || || || || || || ||| || ||||| |||||||| || || || Sbjct 52425 CGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAAT 52366 Query 80288 CATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 80347 | || |||| || | ||| ||| |||||| || || | || |||||||| | Sbjct 52365 CGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGA 52306 Query 80348 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 80407 | || || ||||||||||| || || | || |||| ||| || || ||||| || Sbjct 52305 ACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCGATGA 52246 Query 80408 CTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTC 80467 || | ||||| ||||||||| || || || | ||| | || || || |||| Sbjct 52245 CTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTGGTC 52186 Query 80468 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAA 80527 | || | | || ||| ||| |||| | || || ||||| ||||| ||||||| Sbjct 52185 TCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAACCAA 52126 Query 80528 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 80587 | |||||||| ||||| || |||||| |||| | ||||| | | ||| || | | Sbjct 52125 AGTAGTTGTAGTTGAAGTCACGGTCGTAATTAATGGCAGAGTTCAACTCATCTTTGTGTC 52066 Query 80588 TGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 80647 | | ||| || ||| | || | || ||| | ||| |||| |||| Sbjct 52065 TCATCACTGTGTCATAGGTAAGTTGCGAGACCATAGGACATGCCTTCTTGGTTTTCGGAT 52006 Query 80648 TAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTA 80707 || || || | | |||| | || || || ||||| ||||| | |||||| | Sbjct 52005 TATAGTAACTGTAGAGCTCCTGGACAACATCCGAGAAGAGTTTCTTTGTCTGCTTGTGCA 51946 Query 80708 GATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAG 80767 ||| || | ||| | ||||||||| |||||||||||||| ||||| ||||| || | Sbjct 51945 AATTCGAAATGGCGAGTCTGGCGGCCAAAATGGCATAATCAGGATGGATCGTAGT-CATG 51887 Query 80768 T-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATA 80822 | || || | || |||| || | | || ||||| || || || || || | ||| Sbjct 51886 TACGCAGCGGTCTCAGCTGTCAAATTATCTAATTCAACTGTGGTAACCCCCTCATA 51831 Score = 158 bits (174), Expect = 2e-33 Identities = 951/1503 (63%), Gaps = 68/1503 (5%) Strand=Plus/Plus Query 78736 GATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAG 78795 ||||| | | ||| | |||||| ||||| || || || || || |||| | ||| Sbjct 996521 GATGCAGCCTGCGTCCTTAGATAATACATACCTGTCTTAAGTCCCTTCTTCCAAGCATAG 996580 Query 78796 AAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTATATGGATATTCATAGATTG 78854 |||||||| || || || || || || | | | | || || | ||||| | ||| Sbjct 996581 AAATGCATGCTGGTAAGCTTTGACATGGAACAGGTACG-TAAATAAAGATTCAGACTTTG 996639 Query 78855 ACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAAT 78914 |||||| ||| | | | || ||||| ||||| | ||||| | |||| || Sbjct 996640 CGATTGATCAATGTATGGAGCTCTATCTGCTGCCATATCAATGATTACTCTCTGTGATAT 996699 Query 78915 TTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAAT 78971 ||||| | ||| ||| | ||| || || ||||| | ||| ||||| Sbjct 996700 CTCCCATACTGTTCGATACATATCCTTCATGAATTGTGGAATAGACGAGATATCTTGAAT 996759 Query 78972 GGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGT 79031 |||||| |||| | ||| || |||||| ||| ||||| ||| | |||| | Sbjct 996760 CGATCCATTCGCTGCAACTATCTGATCCTTGATTTCTCGGTTCCACAATCCTTTCTCAAT 996819 Query 79032 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 79091 ||| | || ||||| ||||||| || ||| |||||||| || ||||| || || Sbjct 996820 CAAATCATCAACGAGATAATGATTAACCACCTGATGCTCTCCAGATAACACTCTTCGCGT 996879 Query 79092 GTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGA 79151 || | || ||| ||| || | ||||| | ||| | ||| || | |||||| Sbjct 996880 ATACACGTTGGAGGTTATTGGCTCAAAGCATTCAGTGAATCCTAGAATCTGTGAAGTTGA 996939 Query 79152 TGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATC 79211 ||| || ||||| |||||| ||||| ||| || | || ||||| ||||| || Sbjct 996940 TGCAGTCGGCATTAATGCCACTAATAATGAATTCCTTAATCCATATGAATGAATTTTTTC 996999 Query 79212 TTTTAGAGATTCCCAATCCCAAA--GA-TCAGACG----GGACAACATTCC-----AAAG 79259 || | | ||||||||| | || || | | || | ||||| | | Sbjct 997000 CTTCAATCCCTTCCAATCCCATAATGACTCTGTCTCTTTGGGCTGGATTCCTGGCCACAT 997059 Query 79260 ATCATATTGTAGAATACCGTTACTAGCGTATG---ATCCTGTGTATGTTTCATAAGGTCC 79316 ||||||||| || || || ||||| || |||| || ||||||| || || Sbjct 997060 ATCATATTGAAGTATTCC---ACTAGAAATTGGGGATCCCTCATAGCTTTCATATGGCCC 997116 Query 79317 TTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAAT 79376 ||| || || | || | || || || || || | ||| ||||||| ||| || Sbjct 997117 TTCTTTCATAGCAAGCTCCATAGATGCTTCCAAGGCCCCATGATAGATGGTTTGGAAGAT 997176 Query 79377 CTTCTTATTGAGATCTTGTGC-TTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACG 79435 || | |||||| || | || |||| | || |||| || | || | || ||||| Sbjct 997177 CTCCAAATTGAG-TCGTCTGGATTCTCGACTTCCAAACGGTAACTTCATTTCAAAAAACG 997235 Query 79436 CGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAG 79495 | ||||| | ||| ||||| |||| | | || || || || || ||||||| | ||| Sbjct 997236 CATCTGCAAGTCCCTGAACTCCAACAGCAATTGGCCTGTGCTTCATATTAGAGACCTCAC 997295 Query 79496 CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTT 79555 |||| | |||||| | |||||| | ||||||||| || | |||| Sbjct 997296 ATTCTTTCAGAGGATATGCTCCGACATCTATGACCCGATTGAGATTATGAACAAGAACTT 997355 Query 79556 TGACCACATCCTTTAGTTTGAGAAAATCAAAT------CGTCCATCTATTACA-----AA 79604 || |||| | ||||| | | || |||| |||||||| | | || Sbjct 997356 TGGTCACAGAATGGAGTTTCCGGAGATTAAATGTTGGCCGTCCATCACTAGCCCTCTCAA 997415 Query 79605 CAT-----GTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC--G 79657 ||| | | | | || || |||| |||||| ||||| | |||| | || | Sbjct 997416 CATAACTAGGTAATCCTAAC-GAGGCCAAATTACATACGGCAATTTCATC--CTTCGATG 997472 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 ||||| | | ||| ||| || || | || |||||||| || || ||||| | Sbjct 997473 AATATTCAACAACCTCACAGCAAAGATTCGAGGATTTGATGGTTCCCAAGTTCTGTTGGT 997532 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 | ||| ||| || |||||||||||||| | ||| ||||| || |||||| |||| | Sbjct 997533 TCGACTTGGAGTTGCAGGCATCCTTATAAAGCAAGAAAGGAGTTCCTGTTTCAGTCTGTG 997592 Query 79778 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTC 79837 | || ||| | ||| || |||||| | | ||| | || | || | Sbjct 997593 AAATTAGGATCTTCTCCCACACTTTACGAGCCCTCACCT--GAC--GAATATAAGATCCC 997648 Query 79838 T----TTCGTATTGTGTA-TATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892 ||| |||| || | || | | |||| || | ||||||| || |||||| Sbjct 997649 CGCGATTCATATT-TGCAGTAGAGTTGTTCAAAGGATTTTCCCCAACAGTCAGATAATCC 997707 Query 79893 AGGACAT---TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCAT 79949 |||||| || || | | ||| | ||| || |||| | | || |||||||| Sbjct 997708 AGGACAGGTATCCTCCGAAAACAGGCTC---CACACTTCATCGTTTTCCACACGTTTCAT 997764 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 || | ||| || ||||||||||| ||| ||||| || |||| || ||| || || | Sbjct 997765 GAACAAATCTGGGATCCAAAGAGC-ATAGAATAGGTCCCTGGCCCTCATCTCTTCCTTAC 997823 Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 | |||||||| | || | ||| |||| ||||| | |||||||||||| | ||| Sbjct 997824 CGTGGTTCTTTTTCAAGTCTAAGAATTCCATGATATCCGCATGCCACGGTTCTA--GATA 997881 Query 80069 TGGCC--ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 | | ||| | || |||||||| || || ||||| || | ||| |||||| | || Sbjct 997882 GGCACAGATAGCACCAGGTCGTTTATTACCACCCTGGTCAACATATTGAGCGGTACTGTT 997941 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 80186 | |||| || ||| || | ||| ||| | ||| |||||||| || || |||||| | Sbjct 997942 GAAGACTCGCAGCATAGGCACAATTCCACTTGATTCTCCATTGGTACCCGATATATAGGT 998001 Query 80187 TCC 80189 ||| Sbjct 998002 TCC 998004 >seq23 Length=838141 Score = 253 bits (280), Expect = 3e-62 Identities = 584/866 (67%), Gaps = 14/866 (2%) Strand=Plus/Minus Query 49690 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 49749 |||||||| || || || ||||| ||||||| || |||||||||||||| || ||||| Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955 Query 49750 GTAACATTATAAAtttttttAAATCCCAATTC-AGAAATCAATCTATCCGCGACA-AATT 49807 ||| | || || | ||| | | || | || || |||||| || || ||| || | Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAA-CAATCTGTCGGC-ACAGAAGT 742897 Query 49808 CTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAG 49867 | | |||| | |||||| ||||||||||| || | || ||| || | || | Sbjct 742896 CAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTC 742837 Query 49868 TA-AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCA 49926 | ||||| |||| |||||| || || || || || || | | | ||| | | Sbjct 742836 TCCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTTTCTTA 742778 Query 49927 CTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCG 49986 | || || || ||||| || | | || ||||||||| || | ||| ||| Sbjct 742777 TTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAACCTTCG 742718 Query 49987 TCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGC 50046 ||||| | || |||||||| || || || || || ||||| | || | ||| || ||| Sbjct 742717 TCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCTTTAGC 742658 Query 50047 CAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACA 50106 ||||| |||| ||||||||| || || ||||||| ||||| | ||||| ||||| || Sbjct 742657 CAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGGCGACC 742598 Query 50107 AGTCTCTCTCCATA-ACTGGCGCTGTCATGT--ATCCACTTTTGAGCCCAATCGGCCTTC 50163 | ||| ||| | || | || | | ||| ||||| ||||||| ||||| Sbjct 742597 AATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATGCCTTT 742538 Query 50164 TTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 50223 | || | || || ||||| ||||||||||| | || | ||| || ||||| Sbjct 742537 TCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCTTATCT 742478 Query 50224 TTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 | || || || || | ||| ||| ||| | || ||||| ||||| || | ||| Sbjct 742477 GTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCCACCATGATC 742418 Query 50284 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC-TTCTGTACAAAATCGTTCAGC 50342 || ||||||||||| |||||||| | | ||| || |||||| || | || | Sbjct 742417 TGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAGT-TTTGAAT 742359 Query 50343 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 50402 ||||| |||| || || || ||| ||| ||||| || ||||| ||| || || || Sbjct 742358 CAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGCGATGAA 742299 Query 50403 ATGTTTTTCGTTGGGTGTTAG---TTTATTCCAATCATTGATATCTTTAGATATATCTAC 50459 || | |||| |||| | || || ||||| ||| | ||| || || | ||| | Sbjct 742298 ATATCTTTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGAGAGATCGAT 742239 Query 50460 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 50519 |||||| | ||||| || ||||| || ||||| || ||||| | ||| || |||| || Sbjct 742238 CTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAATATCATCGTA 742179 Query 50520 TTGGATTGGGAAAATAACAAATCTAT 50545 |||||| ||||| || |||||||||| Sbjct 742178 TTGGATAGGGAACATGACAAATCTAT 742153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268117644640