Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq23 214 2e-50 >seq23 Length=838141 Score = 214 bits (236), Expect = 2e-50 Identities = 578/873 (66%), Gaps = 15/873 (2%) Strand=Plus/Minus Query 13595 AACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAA 13654 ||| || ||||| |||||||| || || || ||| ||| || |||||||| ||||| || Sbjct 743021 AACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAA 742962 Query 13655 TGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAAT 13714 ||||||| | | | | ||||| || || ||||| | || ||||| || ||| Sbjct 742961 TGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGCACA 742902 Query 13715 AAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 13774 || |||| ||||||| |||| | ||||||||||||||| | || ||||| | | Sbjct 742901 GAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGC 742842 Query 13775 AT-TGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833 || | | ||| || ||||| ||| |||||| || | || || | || || || | Sbjct 742841 ATCTCTCCAGAAAGTC-TTTTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTT 742783 Query 13834 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893 ||| |||||| | ||| | ||| || | || || || ||||| ||| | | Sbjct 742782 TCTTATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723 Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 | || ||||| | ||||||||||| || || || | ||||||||||| |||| || | Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| |||||| || || |||||||| ||||| ||||| | || || | || || || | Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | |||| |||| | | ||| | ||| | ||||| ||||||| | Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATG 742543 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG 14133 |||| ||||| || |||||||| ||||||||||| || || || || Sbjct 742542 CCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCT 742483 Query 14134 TACTTGAAATGTATGTATCAA-TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14192 || || | ||| || |||| ||| || ||| | ||||| || ||||| |||| Sbjct 742482 TATCTGTCACGTAGGTTTCAAGCAAGAGAG-AATAGGTCTCAGAATGGATGTTCTCCACC 742424 Query 14193 GCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC-TTCCGAGTAAAATCT 14251 ||||| || || || ||| ||||| || | | || || ||| | || || | | Sbjct 742423 ATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAGT-T 742365 Query 14252 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14311 || |||||| |||| ||| ||||||||| || ||||| || ||||| | | Sbjct 742364 TTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGC 742305 Query 14312 AATAAAGTATTGCTCTTCATTG---TTGAG---TTTTTTCCAATCGGATAAATCCTTAGA 14365 || || ||| || ||||||| || || || ||||| || | | |||||| || Sbjct 742304 GATGAAATAT--CT-TTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGA 742248 Query 14366 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14425 ||||| | || || | ||||| ||| || |||| || || ||||| ||| || Sbjct 742247 GAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAAT 742188 Query 14426 TTCTTTATATAATATAGGAAAAACTACAAATCT 14458 || | ||| ||||| || | |||||||| Sbjct 742187 ATCATCGTATTGGATAGGGAACATGACAAATCT 742155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727544258400