Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq23 214 2e-50
>seq23
Length=838141
Score = 214 bits (236), Expect = 2e-50
Identities = 578/873 (66%), Gaps = 15/873 (2%)
Strand=Plus/Minus
Query 13595 AACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAA 13654
||| || ||||| |||||||| || || || ||| ||| || |||||||| ||||| ||
Sbjct 743021 AACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAA 742962
Query 13655 TGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAAT 13714
||||||| | | | | ||||| || || ||||| | || ||||| || |||
Sbjct 742961 TGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGCACA 742902
Query 13715 AAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 13774
|| |||| ||||||| |||| | ||||||||||||||| | || ||||| | |
Sbjct 742901 GAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGC 742842
Query 13775 AT-TGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833
|| | | ||| || ||||| ||| |||||| || | || || | || || || |
Sbjct 742841 ATCTCTCCAGAAAGTC-TTTTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTT 742783
Query 13834 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893
||| |||||| | ||| | ||| || | || || || ||||| ||| | |
Sbjct 742782 TCTTATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
| || ||||| | ||||||||||| || || || | ||||||||||| |||| || |
Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
||| |||||| || || |||||||| ||||| ||||| | || || | || || || |
Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603
Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073
| | |||| |||| | | ||| | ||| | ||||| ||||||| |
Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATG 742543
Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG 14133
|||| ||||| || |||||||| ||||||||||| || || || ||
Sbjct 742542 CCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCT 742483
Query 14134 TACTTGAAATGTATGTATCAA-TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14192
|| || | ||| || |||| ||| || ||| | ||||| || ||||| ||||
Sbjct 742482 TATCTGTCACGTAGGTTTCAAGCAAGAGAG-AATAGGTCTCAGAATGGATGTTCTCCACC 742424
Query 14193 GCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC-TTCCGAGTAAAATCT 14251
||||| || || || ||| ||||| || | | || || ||| | || || | |
Sbjct 742423 ATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAGT-T 742365
Query 14252 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14311
|| |||||| |||| ||| ||||||||| || ||||| || ||||| | |
Sbjct 742364 TTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGC 742305
Query 14312 AATAAAGTATTGCTCTTCATTG---TTGAG---TTTTTTCCAATCGGATAAATCCTTAGA 14365
|| || ||| || ||||||| || || || ||||| || | | |||||| ||
Sbjct 742304 GATGAAATAT--CT-TTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGA 742248
Query 14366 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14425
||||| | || || | ||||| ||| || |||| || || ||||| ||| ||
Sbjct 742247 GAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAAT 742188
Query 14426 TTCTTTATATAATATAGGAAAAACTACAAATCT 14458
|| | ||| ||||| || | ||||||||
Sbjct 742187 ATCATCGTATTGGATAGGGAACATGACAAATCT 742155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479727544258400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |