Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq23 181 1e-40 >seq23 Length=838141 Score = 181 bits (200), Expect = 1e-40 Identities = 571/873 (65%), Gaps = 15/873 (2%) Strand=Plus/Minus Query 13383 AACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAA 13442 ||| || ||||| || ||||| || || || ||| ||| || |||||||| |||||||| Sbjct 743021 AACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAA 742962 Query 13443 TGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAAT 13502 ||||||||| | | | ||||| || || ||||| | ||| ||||| || ||| Sbjct 742961 TGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGCACA 742902 Query 13503 AAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 13562 || |||| ||||||| |||| | ||||||||||||||| | || ||||| | | Sbjct 742901 GAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGC 742842 Query 13563 AT-TAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGT 13621 || | | ||| || ||||| ||| |||||| || | || || | | || || | Sbjct 742841 ATCTCTCCAGAAAGTC-TTTTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTT 742783 Query 13622 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681 ||| |||||| | ||| | ||| || | || || || ||||| ||| | | Sbjct 742782 TCTTATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723 Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 | || ||||| | ||||||||||| || || || | ||||||||||| |||| || | Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||| |||||| || || || ||||| ||||| ||||| | || || | || || || | Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | | | || |||| | | ||| | ||| | ||||| ||||||| | Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATG 742543 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAG 13921 |||| ||||| || ||||| || ||||| ||||| | || || || Sbjct 742542 CCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCT 742483 Query 13922 TACTTGAAATGTATGTATCAA-TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATA 13980 || || | ||| || |||| ||| || ||| | ||||| || ||||| || | Sbjct 742482 TATCTGTCACGTAGGTTTCAAGCAAGAGAG-AATAGGTCTCAGAATGGATGTTCTCCACC 742424 Query 13981 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC-CTCCGAGTAAAATCT 14039 ||||| || || || || ||||| |||| | || || || | || || | | Sbjct 742423 ATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAGT-T 742365 Query 14040 TTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14099 || ||| || |||| ||| ||||||||| || ||||| || ||||| | | Sbjct 742364 TTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGC 742305 Query 14100 AATAAAGTATTGCTCTTCATTG---TTGAG---TTTTTTCCAATCGGCTAAATCCTTAGA 14153 || || ||| || ||||||| || || || ||||| || | | |||||| || Sbjct 742304 GATGAAATAT--CT-TTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGA 742248 Query 14154 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14213 ||||| | || || | ||||| ||| || |||| || || ||||| ||| || Sbjct 742247 GAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAAT 742188 Query 14214 TTCTTTATATAATATAGGAAAAACTACAAATCT 14246 || | ||| ||||| || | |||||||| Sbjct 742187 ATCATCGTATTGGATAGGGAACATGACAAATCT 742155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588345340640