Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq23 181 1e-40
>seq23
Length=838141
Score = 181 bits (200), Expect = 1e-40
Identities = 571/873 (65%), Gaps = 15/873 (2%)
Strand=Plus/Minus
Query 13383 AACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAA 13442
||| || ||||| || ||||| || || || ||| ||| || |||||||| ||||||||
Sbjct 743021 AACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAA 742962
Query 13443 TGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAAT 13502
||||||||| | | | ||||| || || ||||| | ||| ||||| || |||
Sbjct 742961 TGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGCACA 742902
Query 13503 AAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 13562
|| |||| ||||||| |||| | ||||||||||||||| | || ||||| | |
Sbjct 742901 GAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGC 742842
Query 13563 AT-TAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGT 13621
|| | | ||| || ||||| ||| |||||| || | || || | | || || |
Sbjct 742841 ATCTCTCCAGAAAGTC-TTTTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTT 742783
Query 13622 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681
||| |||||| | ||| | ||| || | || || || ||||| ||| | |
Sbjct 742782 TCTTATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
| || ||||| | ||||||||||| || || || | ||||||||||| |||| || |
Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
||| |||||| || || || ||||| ||||| ||||| | || || | || || || |
Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603
Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861
| | | || |||| | | ||| | ||| | ||||| ||||||| |
Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATG 742543
Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAG 13921
|||| ||||| || ||||| || ||||| ||||| | || || ||
Sbjct 742542 CCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCT 742483
Query 13922 TACTTGAAATGTATGTATCAA-TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATA 13980
|| || | ||| || |||| ||| || ||| | ||||| || ||||| || |
Sbjct 742482 TATCTGTCACGTAGGTTTCAAGCAAGAGAG-AATAGGTCTCAGAATGGATGTTCTCCACC 742424
Query 13981 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC-CTCCGAGTAAAATCT 14039
||||| || || || || ||||| |||| | || || || | || || | |
Sbjct 742423 ATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAGT-T 742365
Query 14040 TTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14099
|| ||| || |||| ||| ||||||||| || ||||| || ||||| | |
Sbjct 742364 TTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGC 742305
Query 14100 AATAAAGTATTGCTCTTCATTG---TTGAG---TTTTTTCCAATCGGCTAAATCCTTAGA 14153
|| || ||| || ||||||| || || || ||||| || | | |||||| ||
Sbjct 742304 GATGAAATAT--CT-TTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGA 742248
Query 14154 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14213
||||| | || || | ||||| ||| || |||| || || ||||| ||| ||
Sbjct 742247 GAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAAT 742188
Query 14214 TTCTTTATATAATATAGGAAAAACTACAAATCT 14246
|| | ||| ||||| || | ||||||||
Sbjct 742187 ATCATCGTATTGGATAGGGAACATGACAAATCT 742155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478588345340640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |