Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq45 93.3 3e-14 seq1 86.0 5e-12 >seq45 Length=579175 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||| |||||||| || | |||| |||||||| || || ||||| Sbjct 354919 TCCTTTTGAATGTTGTAGTCGGACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAG 354978 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||| ||||| | || | || || || || ||| || ||||| || Sbjct 354979 ATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTG 355038 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || || |||||| || | || || || || || || | || || || Sbjct 355039 TCAATGGTATCAGAAGACTCGACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACG 355098 Query 43099 AAAATTTGCATTTTCT 43114 |||||||||||||||| Sbjct 355099 AAAATTTGCATTTTCT 355114 >seq1 Length=1746572 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || || || || | ||| ||||| || | ||||| || ||| Sbjct 813832 CCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGAC 813891 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | || ||||| || || || ||||| ||||||| ||| ||||| | || Sbjct 813892 AATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGA 813951 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| || ||||| || ||| ||||| || ||| || Sbjct 813952 ATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAACC 814011 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTA 43122 || | || || || || ||||| | || || || ||||||||||| || ||| ||| Sbjct 814012 TCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATTGATAAGTTTC 814071 Query 43123 TT 43124 || Sbjct 814072 TT 814073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369246756408