Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12 280 2e-70 seq23 232 9e-56 >seq12 Length=1129233 Score = 280 bits (310), Expect = 2e-70 Identities = 748/1136 (66%), Gaps = 8/1136 (1%) Strand=Plus/Minus Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 |||||||||| || || || ||||| ||||||||| ||||||| |||||||| || || | Sbjct 52962 ACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCA 52903 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCC 71892 | || |||||||| |||||| |||| | ||| | |||| | ||| | | || ||||| Sbjct 52902 TGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCT-GAGCC 52844 Query 71893 TTTATTATATTCTTGTATCTCTTTTCTC--TTTCGTATTGTGTATATAATCGTTCGAACT 71950 || | || | | || | | | ||| | ||||| | || ||||| || |||| Sbjct 52843 TTGACGGTA--CGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACT 52786 Query 71951 CGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTC 72010 ||||||| | | | | || ||| ||| || | | | | ||| | | Sbjct 52785 CGTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGAC 52726 Query 72011 CATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 72070 | | | | || || ||||| || | || |||||||| || ||| || | ||| | Sbjct 52725 CGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCAC 52666 Query 72071 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 72130 || | ||||| || || ||||||| | | ||| | ||| | | || || | Sbjct 52665 GGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTG 52606 Query 72131 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTA 72190 ||||| ||||||| || | || || | || || | |||||| ||||| || || | Sbjct 52605 CGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGA 52546 Query 72191 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCAT 72250 |||||| || ||||| || |||| | | |||||||||||||||||| || | ||| | Sbjct 52545 CGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGT 52486 Query 72251 TGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCC 72310 |||| |||| ||| || ||| ||||||||| ||| ||| | ||| || || | Sbjct 52485 TGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGC 52426 Query 72311 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 72370 | || | || || || || || || ||| || ||||| |||||||| || ||| || Sbjct 52425 CGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAAT 52366 Query 72371 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 | ||| |||| || | ||| ||| |||||| || || | || |||||||| | Sbjct 52365 CGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGA 52306 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490 | || || ||||||||||| || || | || |||| ||| || || ||||| || Sbjct 52305 ACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCGATGA 52246 Query 72491 CTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 || | ||||| ||| ||||| || || || | ||| | || ||| || |||| Sbjct 52245 CTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTGGTC 52186 Query 72551 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 72610 | || | | || ||| ||| |||| | ||||| ||||| ||||| ||||||| Sbjct 52185 TCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAACCAA 52126 Query 72611 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATT 72670 | |||||||| ||||| || |||||| |||| | || || | | ||| || | | Sbjct 52125 AGTAGTTGTAGTTGAAGTCACGGTCGTAATTAATGGCAGAGTTCAACTCATCTTTGTGTC 52066 Query 72671 TGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 72730 | | ||| | || ||| | || | || ||| | ||| |||| |||| Sbjct 52065 TCATCACTGTGTCATAGGTAAGTTGCGAGACCATAGGACATGCCTTCTTGGTTTTCGGAT 52006 Query 72731 TAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTA 72790 || || || | | |||| | || || || ||||| ||||| | |||||| | Sbjct 52005 TATAGTAACTGTAGAGCTCCTGGACAACATCCGAGAAGAGTTTCTTTGTCTGCTTGTGCA 51946 Query 72791 GATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAG 72850 ||| || | ||| | ||||||||| | |||||||||||| ||||| ||||| || | Sbjct 51945 AATTCGAAATGGCGAGTCTGGCGGCCAAAATGGCATAATCAGGATGGATCGTAGT-CATG 51887 Query 72851 T-GGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATA 72905 | || || | || |||| || | | || ||||| || || || || || | ||| Sbjct 51886 TACGCAGCGGTCTCAGCTGTCAAATTATCTAATTCAACTGTGGTAACCCCCTCATA 51831 Score = 154 bits (170), Expect = 2e-32 Identities = 719/1113 (65%), Gaps = 59/1113 (5%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 ||||| |||| | || ||||| |||||||| || || || | || || || Sbjct 997091 GATCCCTCATAGCTTTCATATGGCCCTTCTTTCATAGCAAGCTCCATAGATGCTTCCAAG 997150 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGC-TTCCGGGCTATC 71492 || |||| ||| ||||||| ||| |||| | |||||| || | || ||| | || | Sbjct 997151 GCCCCATGATAGATGGTTTGGAAGATCTCCAAATTGAG-TCGTCTGGATTCTCGACTTCC 997209 Query 71493 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 ||| || | || | || |||||| ||||| | ||| ||||| |||| | | || || Sbjct 997210 AAACGGTAACTTCATTTCAAAAAACGCATCTGCAAGTCCCTGAACTCCAACAGCAATTGG 997269 Query 71553 TCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 71612 ||||| || ||||||| | ||| |||| | |||||| | |||||| | Sbjct 997270 CCTGTGCTTCATATTAGAGACCTCACATTCTTTCAGAGGATATGCTCCGACATCTATGAC 997329 Query 71613 TTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCT 71672 ||||||||| || | |||||| |||| | ||||| | | || |||| | Sbjct 997330 CCGATTGAGATTATGAACAAGAACTTTGGTCACAGAATGGAGTTTCCGGAGATTAAATGT 997389 Query 71673 C--CCATCTATTACAAACACGTTCAAGGCAACA-------------GATGCCAGATTACA 71717 || || || || | | | |||| ||| || |||| |||||| Sbjct 997390 TGGCCGTCCATCACTAGCCCTCTCAACATAACTAGGTAATCCTAACGAGGCCAAATTACA 997449 Query 71718 AACGGCTACCTCATTAGCATCG--GCATATTGTATAATTTCAGTGCAAAGATTACTACAC 71775 ||||| | |||| | ||| | ||||| | || ||| ||||||||| | Sbjct 997450 TACGGCAATTTCATC--CTTCGATGAATATTCAACAACCTCACAGCAAAGATTCGAGGAT 997507 Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATA 71835 ||||||||||| || || ||||| || ||| ||| || |||||||||||||| | Sbjct 997508 TTGATGGTTCCCAAGTTCTGTTGGTTCGACTTGGAGTTGCAGGCATCCTTATAAAGCAAG 997567 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 71895 || ||||| || |||||| |||| || || ||| | ||| || |||||| | Sbjct 997568 AAAGGAGTTCCTGTTTCAGTCTGTGAAATTAGGATCTTCTCCCACACTTTACGAGCCCTC 997627 Query 71896 A--TTAT-ATTCTTGTATCTCTTTTCTCT-TTCGTATTGTGTA-TATAATCGTTCGAACT 71950 | | | | | | ||| | | | ||| |||| || | || | | |||| || Sbjct 997628 ACCTGACGAATATAAGATCCC----CGCGATTCATATT-TGCAGTAGAGTTGTTCAAAGG 997682 Query 71951 CGTCTCCCCAAGCATTGTC---TAATCCAGGACATTCATTCGGACACATCAATGACCACT 72007 | ||||||| || ||| |||||||||||| || | | | || |||| Sbjct 997683 ATTTTCCCCAA-CA--GTCAGATAATCCAGGACAGGTATCCTCCGAAAACAGGCTCCACA 997739 Query 72008 CTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGA 72066 || |||| | | || |||||||| || | ||| || ||||||||||| ||| ||||| Sbjct 997740 CTTCATCGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGAGC-ATAGAATAGG 997798 Query 72067 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 72126 || |||| || ||| || || || |||||||| | || | ||| |||| ||| Sbjct 997799 TCCCTGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAGTCTAAGAATTCCATGATA 997858 Query 72127 TCAGAATGCCACGGTTCCAAGTATATGGCC--ATAACTCCCGGCCGTTTGTTTCCTCCCT 72184 || | |||||||||||| | ||| | | ||| | || || ||||| || || |||| Sbjct 997859 TCCGCATGCCACGGTTCTA--GATAGGCACAGATAGCACCAGGTCGTTTATTACCACCCT 997916 Query 72185 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 72244 | || | ||| |||||| | || | |||| || ||| || | ||| ||| | ||| Sbjct 997917 GGTCAACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAATTCCACTTGATT 997976 Query 72245 CACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGC-TAATTGATAGACCT 72303 | |||||||| || || |||||| |||| || | | ||||| ||| || | ||| Sbjct 997977 CTCCATTGGTACCCGATATATAGGTTCCTGCTGCCCTTACATTGCTTAAATG-CATACCA 998035 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCCCTC 72362 ||||| || || ||| || || | || ||| | | ||| ||| | |||| || || Sbjct 998036 ATTCCACCGGCAGCTTTCGATATCATAGCACAT-TTGTGAACTGTACGAAAGATCCCATC 998094 Query 72363 TATACTATCATCC-ATCATGTTAAGTAGAAAACA----GCTAGACATTTGGTGACGACT- 72416 || | |||||| | ||| || || ||||| | |||| |||| || ||| Sbjct 998095 TAGAGAGTCATCCTCTAATG-AAACCAGGAAACATGACGATAGA---TTGGGGA--ACTC 998148 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 ||| |||||||| || | ||| || || || || Sbjct 998149 AGTACCCGCATTGAAAAGGGTGGGTGATGCATG 998181 >seq23 Length=838141 Score = 232 bits (256), Expect = 9e-56 Identities = 582/871 (67%), Gaps = 24/871 (3%) Strand=Plus/Minus Query 41795 TTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 41854 |||||||| || || |||||||| ||||||| || |||||||||||||| || ||||| Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955 Query 41855 GTAACATTATAAAtttttttAAATCCCAATTC-AGAAATCAATCTATCTGCGATGAATTC 41913 ||| | || || | ||| | | || | || || |||||| || || ||| || Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAA-CAATCTGTCGGCACAGAAGTC 742896 Query 41914 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 41973 | |||| | |||||| ||||||||||| || | || ||| || | || | | Sbjct 742895 AACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTCT 742836 Query 41974 A-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTG-----TTTC 42027 ||||| |||| ||||||| || || || || || |||||| || |||| Sbjct 742835 CCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCAT----GATCTTGGTGATGATTTTC 742781 Query 42028 TTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACC 42087 || | | || || | ||||| || | | || ||||||||| || | ||| Sbjct 742780 TT-ATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAACC 742722 Query 42088 CTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 42147 || ||||| | || | |||||| || || || || || ||||| | || | ||| || Sbjct 742721 TTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCTT 742662 Query 42148 AAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 |||||||| || | ||||||||| || || ||||||| ||||| | || || ||||| Sbjct 742661 TAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGGC 742602 Query 42208 AATAAGTCTCTCTCCATAACCGGCA-CTGTCATGT--ATCCACTTTTGAGCCCAATCGGC 42264 | | ||| ||| | || ||| | | ||| ||||| ||||||| || Sbjct 742601 GACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATGC 742542 Query 42265 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 42324 ||| | || | || || ||||| ||||||||||| | || | ||| || | Sbjct 742541 CTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCTT 742482 Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||| | || || || || | ||| ||| ||| | || ||||| ||||| || | Sbjct 742481 ATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCCACCAT 742422 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC-TTCTGTACAAAATCGTT 42443 ||||| ||||||||||| || ||||| | | ||| || |||||| || | || Sbjct 742421 GATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAGT-TTT 742363 Query 42444 CAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 42503 | ||||| || | || || || ||| ||| ||||| || ||||| ||| || | Sbjct 742362 GAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGCGA 742303 Query 42504 TAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATATCTTTAGATATA 42559 | |||||| |||| | || |||| || ||||| ||| | ||| || || | | Sbjct 742302 TGAAATATCTTTCAT-TGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGAGAGA 742244 Query 42560 TCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCA 42619 || | ||||| | ||||| || |||||||| ||||| || ||||| | ||| |||||| Sbjct 742243 TCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAATATCA 742184 Query 42620 TGATATTGAATTGGGAAAATAACAAATCTAT 42650 | ||||| || ||||| || |||||||||| Sbjct 742183 TCGTATTGGATAGGGAACATGACAAATCTAT 742153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138562417760