Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23 141 1e-28 seq16 131 2e-25 >seq23 Length=838141 Score = 141 bits (156), Expect = 1e-28 Identities = 395/592 (67%), Gaps = 23/592 (4%) Strand=Plus/Plus Query 124980 AGCAGTAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAG 125039 |||| ||||||| | |||| || ||| || |||| |||||| | |||||||| ||| Sbjct 742150 AGCA-TAGATTTGTCATGTTCCCTATCCAATACGATGATATTTGGCAGATGTACAAGAAG 742208 Query 125040 GCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTAC--GATT 125097 ||| | || || || ||||| | |||||| ||||||| || ||||| ||| | || | Sbjct 742209 GCTGAAGCATCTTTCTGGACTGCGGAAGAGATCGATCTCTCAAAGGA--TGTTCCTGACT 742266 Query 125098 GGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTT--TGGCCTTCT 125154 || ||| | | || | || | ||| || | || || ||||| | | ||||||||| Sbjct 742267 GGAAGAACAAGCTTAA-TGCCAATGAAAGATATTTCAT--CGCACGTGTGTTGGCCTTCT 742323 Query 125155 TTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCA-AGAGTTG 125213 |||||| ||| ||||| ||||| | || ||| || | | ||| | || | ||| Sbjct 742324 TTGCCGCCTCTGATGGTATCGTTGATGAGAATTTGATTCAAAACTTCACACAGAACGTTC 742383 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 | | | ||||||| | ||| ||||||||||| |||||| | |||||| | || || Sbjct 742384 AGC-TGCCAGAGGCTAGGGCCTTCTACGGATTCCAGATCATGGTGGAGAACATCCATTCT 742442 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACAT--GC 125331 || | || ||| || |||| | ||| | ||| | | | || | || Sbjct 742443 GAGACCTATTCTCTCTTGCTTGAAACCTACGTGACAGATAAG--AAGGAATCTGATTACT 742500 Query 125332 TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGT 125391 | ||||| || || || || | || | || ||||||| ||||| |||| | Sbjct 742501 TATTTAATGCCATTGAAACTATTCCCCCAATTAAGGAAAAGGCATTATGGGCTCTTCGTT 742560 Query 125392 GGATCGATGACGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAG 125448 ||||| || |||| | | ||||| || ||| |||| || |||||||| | | Sbjct 742561 GGATC---AACAGCAAGGATGCACTATACGCAGAAAGATTGGTCGCCTTCGCCGCTATCG 742617 Query 125449 AGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCA 125508 | || ||||||| || ||| |||||||||||||||||||| |||||| | || | | Sbjct 742618 AAGGTGTCTTCTTCTCCGGTTCATTTGCGGCCATCTTTTGGCTAAAGAAGAGAGGTTTGA 742677 Query 125509 TGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACA 125560 |||| || || || | ||||| |||| | ||||||| || |||| Sbjct 742678 TGCCAGGTCTTACCTTCTCGAACGAACTTATCTGCAGAGACGAAGGTTTACA 742729 >seq16 Length=109755 Score = 131 bits (144), Expect = 2e-25 Identities = 238/345 (69%), Gaps = 14/345 (4%) Strand=Plus/Plus Query 70034 TTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTC 70093 |||||||| || || ||| |||| ||||| ||| |||| || | ||||||||| Sbjct 14713 TTGGATTCCCTAGGACTCAAGAGTAGACGAGAGGATGATTTGGGTCCTATCTACGGATTC 14772 Query 70094 CAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGT 70153 || ||||| || | || | |||||||| || || || || |||||| | || || || Sbjct 14773 CAATGGAGACATTTCGGTGCTAAGTATGTCGATTGTGATACCGACTATACCGGACAAGGA 14832 Query 70154 GTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATC 70213 |||||||| | || || ||| | ||||| ||||||||||| ||||| || ||| Sbjct 14833 TTTGATCAAATCGCTACCATTATTCATACTCTAAAGACCAATCCTTACGATAGAAGAATC 14892 Query 70214 GTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TG 70272 || | | | ||||||||| | | ||| | ||||||||||||| ||||||||| | Sbjct 14893 ATACTATCAGCTTGGAATCCTCCCGCTTTCAAAGAAATGGCACTACCTCCGTGTCACGTC 14952 Query 70273 TTTGGC----------TCAG-TTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTAT 70321 || || |||| ||| | ||| || | | ||| ||| ||||| Sbjct 14953 TTCTGCCAGTTCTACGTCAGCTTTAAATCGGACAAGCCGAGGTTGAATTGCCAGATGTAC 15012 Query 70322 CAGAG-GAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGC 70365 ||||| ||| ||| ||||| || ||||| |||||||||||||| Sbjct 15013 CAGAGATCGTG-CGATATGGGTCTTGGTGTTCCCTTTAACATTGC 15056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058495993760