Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq45 95.1 1e-14 seq15 91.5 1e-13 >seq45 Length=579175 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || || | ||||| || | ||| ||||| ||||| |||||||| ||| | Sbjct 354883 CCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCGGAC 354942 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | || |||||||| || || ||| | || | ||||| ||||| || Sbjct 354943 AAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGG 355002 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || || || ||| || || || || | | ||| | ||| || || | Sbjct 355003 ATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTGTCAATGGTATCAGAAGACTCGACT 355062 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||| ||||||||| || || ||||| || || || |||||||||||||| Sbjct 355063 TCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 355112 >seq15 Length=115448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 19991 AACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTA 20050 |||||||| ||||| || || ||||| || || || || ||||| || | ||| || Sbjct 462 AACCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTA 403 Query 20051 GAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCT 20110 |||||| || || || || ||| | || | ||||| ||||| || | |||||| Sbjct 402 CCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCT 343 Query 20111 TTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTA 20170 || || || ||||||||||| | | | | || || ||| ||||| ||| Sbjct 342 TTATCTTGGATCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTG 283 Query 20171 ATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||||| || || || ||||| ||||| ||||| Sbjct 282 ATGGTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || ||||| ||||| || || ||||| || || || || ||||| || Sbjct 243 CCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAA 184 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| || || || || ||| | || | ||||| ||||| || Sbjct 183 AGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGA 124 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || || ||||||||||| | | | | ||| || || | Sbjct 123 ATACCTTCTTTATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCGACT 64 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || ||||| ||||| ||||| Sbjct 63 TCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419586811357356