Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq23 149 5e-31 >seq23 Length=838141 Score = 149 bits (164), Expect = 5e-31 Identities = 554/856 (65%), Gaps = 13/856 (2%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || || || ||| ||| || ||||| || ||||| || ||||| | || || || ||| Sbjct 743035 TTCTGGTAATCGGAAACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTT 742976 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| |||||||| |||||| | | ||| ||| | || |||| |||||| Sbjct 742975 TCCATGAAATCGAATGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAAC 742916 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 |||||||| ||| || || | || || | ||| | |||||| ||||| || | | Sbjct 742915 AATCTGTCGGCACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAGA 742856 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 ||||| | || ||| | | || | ||||| ||||| || ||||| | | || Sbjct 742855 GAAACAGGTAATGCATCTCTCCAGAAAGTCTTTTCAATATCCACAGCTTCAGTCATGATC 742796 Query 13100 TCTCTTATTACGTTCTCTAAT-GGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 | | || | |||| || | ||||| | | | ||| || | | || || || Sbjct 742795 TTGGTGATGATTTTCT-TATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAA 742737 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||| || || ||||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 742736 ATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCAT 742677 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 | |||| || || | |||||| || || ||||| ||||| || || || | ||||| Sbjct 742676 CAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTC 742617 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATA-CGTACTATTTTTACTCTCTATCCACT 13337 | || || || || | ||| ||||| | || || | || || || | ||||| Sbjct 742616 GATAGCGGCGAAGGCGACCAATCTTTCTGCGTATAGTGC-ATCCTTGCTGTTGATCCAAC 742558 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 ||||| ||| |||| |||| | ||| |||| || || |||||||| | Sbjct 742557 GAAGAGCCCATAATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGT 742498 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 ||| |||||| | ||| | || || || | ||| | ||| | || |||| Sbjct 742497 AATCAGATTCCTTCTTATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAAT 742438 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC-T 13516 | || || |||| | || ||||| || || || |||||||||| | |||||| | Sbjct 742437 GGATGTTCTCCACCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGT 742378 Query 13517 TCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 || | || || | ||| || || || | ||| || || ||| || ||||| || Sbjct 742377 TCTGTGTGAAGT-TTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAG 742319 Query 13577 GC--AAGTATGTGCTTAATAAAttttttttCGTTTTC-TGA--CAACTTTAACCAATCTG 13631 || | | |||| || || | | |||| || | | | | || ||| || | Sbjct 742318 GCCAACACACGTGC--GATGAAATATCTTTCATTGGCATTAAGCTTGTTCTTCCAGTCAG 742261 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 ||| ||| ||||| | ||| | ||| || | ||||| ||||| || |||||||||| | Sbjct 742260 GAACATCCTTTGAGAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGT 742201 Query 13692 ACATCATCCATATATC 13707 ||||| ||| ||||| Sbjct 742200 ACATCTGCCAAATATC 742185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982000802552