Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq15 149 1e-30 seq23 147 5e-30 >seq15 Length=115448 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| |||||||| || |||||||| ||||||| || || || Sbjct 213 GTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTAACTGCTTACCG 154 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||||||||| || ||||||||||| || |||||| ||| Sbjct 153 GCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGATCTTTTGTTTC 94 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| || || || || | || || ||||||||||| | ||| Sbjct 93 ACATTATCGATCGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTACCAGTCAATGTC 34 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 33 TTGACGAAAATCTGCAT 17 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| |||||||| || |||||||| ||||||| || || || Sbjct 441 GTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTAACTGCTTACCG 382 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||||||||| || ||||||||||| || |||||| ||| Sbjct 381 GCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGATCTTTTGTTTC 322 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| || || | || || || || || || | ||| Sbjct 321 ACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATGGTTTTGCCTGTTAATGTC 262 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 261 TTGACGAAAATCTGCAT 245 >seq23 Length=838141 Score = 147 bits (162), Expect = 5e-30 Identities = 402/610 (66%), Gaps = 8/610 (1%) Strand=Plus/Plus Query 268698 ATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCG 268757 |||||||||| || || || || || | | |||||| ||| ||||||||| |||| | Sbjct 742153 ATAGATTTGTCATGTTCCCTATCCAATACGATGATATTTGGCAGATGTACAAGAAGGCTG 742212 Query 268758 TTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAA 268817 || ||||| ||||||| ||||| | ||||| || | || | || ||||| | Sbjct 742213 AAGCATCTTTCTGGACTGCGGAAGAGATCGATCTCTCAAAGGATGTTCCTGACTGGAAGA 742272 Query 268818 AT----TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTT 268873 | |||| ||| | |||||| || || | | | | || || ||||| | Sbjct 742273 ACAAGCTTAATGCCA-ATGAAAGATATTTCATCGCACGTGTGTTGGCCTTCTTTGCCGCC 742331 Query 268874 AGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCT 268933 ||||||||||||| | || ||| | | | || ||| || | || ||| | || Sbjct 742332 TCTGATGGTATCGTTGATGAGAATTTGATTCAAAACTTCACACAGAACGTTCAGCTGCCA 742391 Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 || || || || |||||||||||||| | || || || ||||| |||| || Sbjct 742392 GAGGCTAGGGCCTTCTACGGATTCCAGATCATGGTGGAGAACATCCATTCTGAGACCTAT 742451 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCT 269053 ||| || | || || || | ||||| || ||| | ||||| | | Sbjct 742452 TCTCTCTTGCTTGAAACCTACGTGACAGATAAGAAGGAATCTGATTACTTATTTAATGCC 742511 Query 269054 ATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC-GA 269112 || |||||| | | | |||| | ||||||||| ||||| ||| | Sbjct 742512 ATTGAAACTATTCCCCCAATTAAGGAAAAGGCATTATGGGCTCTTCGTTGGATCAACAGC 742571 Query 269113 TAGCGCGC-CT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 || || || |||| |||||| || || || || |||||| | |||||| | ||||| Sbjct 742572 AAGGATGCACTATACGCAGAAAGATTGGTCGCCTTCGCCGCTATCGAAGGTGTCTTCTTC 742631 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || || ||||| || ||||||||| | ||||| ||||| | |||||||| | || Sbjct 742632 TCCGGTTCATTTGCGGCCATCTTTTGGCTAAAGAAGAGAGGTTTGATGCCAGGTCTTACC 742691 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 ||||| |||||| | || |||| |||||||||||||| ||| ||||| || ||||| Sbjct 742692 TTCTCGAACGAACTTATCTGCAGAGACGAAGGTTTACATACCGATTTCGCCTGCCTATTA 742751 Query 269291 TTTACTAATT 269300 || || ||| Sbjct 742752 TTCTCTCATT 742761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397278825808