Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq15 149 1e-30
seq23 147 5e-30
>seq15
Length=115448
Score = 149 bits (164), Expect = 1e-30
Identities = 151/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| ||||| |||||||| || |||||||| ||||||| || || ||
Sbjct 213 GTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTAACTGCTTACCG 154
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | ||||| ||||||||||| || ||||||||||| || |||||| |||
Sbjct 153 GCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGATCTTTTGTTTC 94
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||| || || || || | || || ||||||||||| | |||
Sbjct 93 ACATTATCGATCGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTACCAGTCAATGTC 34
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 33 TTGACGAAAATCTGCAT 17
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| ||||| |||||||| || |||||||| ||||||| || || ||
Sbjct 441 GTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTAACTGCTTACCG 382
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | ||||| ||||||||||| || ||||||||||| || |||||| |||
Sbjct 381 GCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGATCTTTTGTTTC 322
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || || ||| || || | || || || || || || | |||
Sbjct 321 ACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATGGTTTTGCCTGTTAATGTC 262
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 261 TTGACGAAAATCTGCAT 245
>seq23
Length=838141
Score = 147 bits (162), Expect = 5e-30
Identities = 402/610 (66%), Gaps = 8/610 (1%)
Strand=Plus/Plus
Query 268698 ATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCG 268757
|||||||||| || || || || || | | |||||| ||| ||||||||| |||| |
Sbjct 742153 ATAGATTTGTCATGTTCCCTATCCAATACGATGATATTTGGCAGATGTACAAGAAGGCTG 742212
Query 268758 TTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAA 268817
|| ||||| ||||||| ||||| | ||||| || | || | || ||||| |
Sbjct 742213 AAGCATCTTTCTGGACTGCGGAAGAGATCGATCTCTCAAAGGATGTTCCTGACTGGAAGA 742272
Query 268818 AT----TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTT 268873
| |||| ||| | |||||| || || | | | | || || ||||| |
Sbjct 742273 ACAAGCTTAATGCCA-ATGAAAGATATTTCATCGCACGTGTGTTGGCCTTCTTTGCCGCC 742331
Query 268874 AGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCT 268933
||||||||||||| | || ||| | | | || ||| || | || ||| | ||
Sbjct 742332 TCTGATGGTATCGTTGATGAGAATTTGATTCAAAACTTCACACAGAACGTTCAGCTGCCA 742391
Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993
|| || || || |||||||||||||| | || || || ||||| |||| ||
Sbjct 742392 GAGGCTAGGGCCTTCTACGGATTCCAGATCATGGTGGAGAACATCCATTCTGAGACCTAT 742451
Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCT 269053
||| || | || || || | ||||| || ||| | ||||| | |
Sbjct 742452 TCTCTCTTGCTTGAAACCTACGTGACAGATAAGAAGGAATCTGATTACTTATTTAATGCC 742511
Query 269054 ATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC-GA 269112
|| |||||| | | | |||| | ||||||||| ||||| ||| |
Sbjct 742512 ATTGAAACTATTCCCCCAATTAAGGAAAAGGCATTATGGGCTCTTCGTTGGATCAACAGC 742571
Query 269113 TAGCGCGC-CT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170
|| || || |||| |||||| || || || || |||||| | |||||| | |||||
Sbjct 742572 AAGGATGCACTATACGCAGAAAGATTGGTCGCCTTCGCCGCTATCGAAGGTGTCTTCTTC 742631
Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230
|| || || ||||| || ||||||||| | ||||| ||||| | |||||||| | ||
Sbjct 742632 TCCGGTTCATTTGCGGCCATCTTTTGGCTAAAGAAGAGAGGTTTGATGCCAGGTCTTACC 742691
Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290
||||| |||||| | || |||| |||||||||||||| ||| ||||| || |||||
Sbjct 742692 TTCTCGAACGAACTTATCTGCAGAGACGAAGGTTTACATACCGATTTCGCCTGCCTATTA 742751
Query 269291 TTTACTAATT 269300
|| || |||
Sbjct 742752 TTCTCTCATT 742761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151397278825808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |