Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq37 116 6e-22 seq10 96.9 5e-16 >seq37 Length=33090 Score = 116 bits (128), Expect = 6e-22 Identities = 177/251 (71%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| ||| |||||||||| ||||| || || |||||||||||| | | ||||| | Sbjct 22090 AGAT-TCTCAGAGATAACATTCAAGGTATTACGAAGCCAGCTATCAGAAGATTGGCTAGA 22032 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| || ||| | |||| | ||| | ||||| || || | | |||| | ||| Sbjct 22031 AGAGGTGGTGTTAAGAGAATCTCCGCTTTGATTTATGAGGAAGTTAGAGCTGTTCTAAAG 21972 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | ||||| ||| |||||| ||||| | ||||| ||||| || || | ||| Sbjct 21971 ACTTTCCTTGAGAACGTTATTAGGGATGCCGTTACTTATACTGAGCATGCCAAGAGAAAG 21912 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 |||||||| || ||||| | || ||||| || || | |||||| | | | ||||| Sbjct 21911 ACTGTCACTTCATTGGATGTTGTTTATGCTTTAAAGAGACAAGGCAGAACTTTGTATGGA 21852 Query 16688 TTTGGAAGTTA 16698 |||||| |||| Sbjct 21851 TTTGGAGGTTA 21841 >seq10 Length=190340 Score = 96.9 bits (106), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 ||||| ||| |||||||||| ||||| ||||||||||| || ||| | | |||| | Sbjct 3147 AGATC-CTTAGAGATAACATTCAAGGTATCACCAAGCCTGCCATCAGAAGATTGGCAAGA 3089 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| || ||| | |||| | || | || || || | | | ||| || ||| Sbjct 3088 AGAGGTGGTGTTAAGAGAATCTCCGCTTTAATTTACGAGGAAGTCAGAGCTGTCTTAAAG 3029 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | ||||| ||| ||| ||| ||||| | ||||||||||| || || | ||| Sbjct 3028 ACTTTCCTTGAGAACGTCATCAGAGATGCCGTTACTTATACCGAGCATGCCAAGAGAAAG 2969 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||| || || ||||| | |||||||| ||||| Sbjct 2968 ACTGTTACTTCTTTGGATGTTGTCTATGCTTTGAA 2934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075130512668