Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq23 141 1e-28 >seq23 Length=838141 Score = 141 bits (156), Expect = 1e-28 Identities = 567/886 (64%), Gaps = 13/886 (1%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 || || ||||| ||| || |||||||| || || |||||||| ||||||| || | Sbjct 743035 TTCTGGTAATCGGAAACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTT 742976 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||||| ||||||||| || || | | ||| | || || || ||| Sbjct 742975 TCCATGAAATCGAATGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAAC 742916 Query 21305 AATCTATCTGCTACA-AATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||| || || ||| || || | ||||||| |||| | |||||||||||||| | | Sbjct 742915 AATCTGTCGGC-ACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAG 742857 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 ||||| | || | | || | |||| ||||| ||| || |||||| || || Sbjct 742856 AGAAACAGGTAATGCATCTCTCCAGAAAGTCTTTTCAATATCCACAGCTTCAGTCATGAT 742797 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 || | || | || |||| || | || || || | | || || || Sbjct 742796 CTTGGTGATGATTTTCTTATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAA 742737 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 ||| ||| |||||||| || || | || | ||| || || || || | ||| ||||| Sbjct 742736 ATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCAT 742677 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 || |||||||| |||| |||||| || | |||||||| || || ||||| | || || Sbjct 742676 CAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTC 742617 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTAT-GTAGATTCTTTATCCAATATCCATT 21662 | || || || || || |||| ||| ||||| || || ||| | ||||| Sbjct 742616 GATAGCGGCGAAGGCGACCAATCTTTCTGCGTATAGTGCATCCTTGCT-GTTGATCCAAC 742558 Query 21663 TTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 |||||| ||||||||| ||||| ||| || ||||| || || || | | Sbjct 742557 GAAGAGCCCATAATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGT 742498 Query 21723 GAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAAT 21782 || ||| | ||| || | | | ||| | ||||||| Sbjct 742497 AATCAGATTCCTTCTTATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAAT 742438 Query 21783 GTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAAC-C 21841 | || || || | | ||||| |||||||| || || ||||||| ||||| Sbjct 742437 GGATGTTCTCCACCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGT 742378 Query 21842 TCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAAT 21901 || | | || | |||| ||| || |||| || || |||||| ||||||||| || Sbjct 742377 TCTGTGTGAAGT-TTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAG 742319 Query 21902 GCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA----TTTTTTCCAATCTAA 21957 ||||| | | | || ||||||| ||| || | |||| || ||||| || Sbjct 742318 GCCAACACACGTGCGATGAAATATCTTTCATTGGC-ATTAAGCTTGTTCTTCCAGTCAGG 742260 Query 21958 TAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCA-AAAGCTAGCAATAGCCTTTTTAT 22016 | ||| ||||| | ||| | ||||| | ||||| |||| | || |||||| || | Sbjct 742259 AACATCCTTTGAGAGATCGATCTCTTCCGCAGTCCAGAAAGAT-GCTTCAGCCTTCTTGT 742201 Query 22017 ACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCT 22062 |||| ||| ||||||| ||| || || || || ||||| || Sbjct 742200 ACATCTGCCAAATATCATCGTATTGGATAGGGAACATGACAAATCT 742155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900294694240