Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12 269 3e-67 seq23 233 2e-56 >seq12 Length=1129233 Score = 269 bits (298), Expect = 3e-67 Identities = 746/1138 (66%), Gaps = 12/1138 (1%) Strand=Plus/Minus Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 ||||||| || || || || ||||| ||||||||| ||||||| |||||||| || || | Sbjct 52962 ACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCA 52903 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCC 63086 ||||||||||||| |||||| |||| | ||| | |||| | ||| | | || ||||| Sbjct 52902 TGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCT-GAGCC 52844 Query 63087 TTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCG 63146 || | || | | | | || || ||||| | || || || || |||||| Sbjct 52843 TTGACGGTACGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACTCG 52784 Query 63147 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63206 ||||| | || | | || ||| ||| || | | | | ||| | ||| Sbjct 52783 TCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGACCG 52724 Query 63207 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63266 | | || || || ||||| || | || |||||||| || ||| || | ||| | | Sbjct 52723 TTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCACGG 52664 Query 63267 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63326 | | |||||| || || ||||||| | | ||| | ||| | | || || | Sbjct 52663 GCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTGCG 52604 Query 63327 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63386 ||||| ||||||| || | || || | || || | |||||| ||||| || || | | Sbjct 52603 TGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGACG 52544 Query 63387 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63446 ||||| || ||||| || |||| | | ||||||||||||||| ||||| |||| ||| Sbjct 52543 TATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGTTG 52484 Query 63447 GTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCT 63506 ||||||| ||| || ||| ||||||||| || ||| | ||| || || || Sbjct 52483 GTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGCCG 52424 Query 63507 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCA 63566 || | || || || || || || ||| || || || ||||| || || || ||| Sbjct 52423 GCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAATCG 52364 Query 63567 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 63626 || |||| || | ||| ||| |||||| || || | || |||||||| || Sbjct 52363 TCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGAAC 52304 Query 63627 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63686 || || ||||||||||| || || | || || | ||| || || ||||| | | Sbjct 52303 AAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTC----GAT 52248 Query 63687 GAGTCT----ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63742 || ||| ||||| ||||||||| || || || | ||| | || || || || Sbjct 52247 GACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTGG 52188 Query 63743 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63802 ||| || | | || || ||| |||| | ||||| ||||| ||||| ||||| Sbjct 52187 TCTCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAACC 52128 Query 63803 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATA 63862 ||| |||||||| ||||| || |||||| |||| | ||||| | | ||| || | Sbjct 52127 AAAGTAGTTGTAGTTGAAGTCACGGTCGTAATTAATGGCAGAGTTCAACTCATCTTTGTG 52068 Query 63863 TTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGG 63922 | | | ||| | || ||| | || | || ||| | ||| |||| || Sbjct 52067 TCTCATCACTGTGTCATAGGTAAGTTGCGAGACCATAGGACATGCCTTCTTGGTTTTCGG 52008 Query 63923 ATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 63982 |||| || || | | |||| | || || || ||||| ||||| | |||||| Sbjct 52007 ATTATAGTAACTGTAGAGCTCCTGGACAACATCCGAGAAGAGTTTCTTTGTCTGCTTGTG 51948 Query 63983 TAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACA 64042 | ||| || | ||| | ||||||||| | |||||||||||| ||||| ||||| || Sbjct 51947 CAAATTCGAAATGGCGAGTCTGGCGGCCAAAATGGCATAATCAGGATGGATCGTAGT-CA 51889 Query 64043 AGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATA 64099 || || || | || |||| || | | || ||||| || || || || || | ||| Sbjct 51888 TGTACGCAGCGGTCTCAGCTGTCAAATTATCTAATTCAACTGTGGTAACCCCCTCATA 51831 Score = 141 bits (156), Expect = 1e-28 Identities = 596/925 (64%), Gaps = 37/925 (4%) Strand=Plus/Plus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 ||||| |||| | || ||||| ||||| ||| ||| || || | || || || Sbjct 997091 GATCCCTCATAGCTTTCATATGGCCCTTCTTTCATAGCAAGCTCCATAGATGCTTCCAAG 997150 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC-TTCCAGGCTATC 62686 || || | ||| ||||||| |||||||| | ||| || || | || ||| | || | Sbjct 997151 GCCCCATGATAGATGGTTTGGAAGATCTCCAAATTGAG-TCGTCTGGATTCTCGACTTCC 997209 Query 62687 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 ||| || | || | || |||||| || || | ||| ||||| |||| | | || || Sbjct 997210 AAACGGTAACTTCATTTCAAAAAACGCATCTGCAAGTCCCTGAACTCCAACAGCAATTGG 997269 Query 62747 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62806 || || || ||||||||| ||| |||| | |||||| | |||||| | Sbjct 997270 CCTGTGCTTCATATTAGAGACCTCACATTCTTTCAGAGGATATGCTCCGACATCTATGAC 997329 Query 62807 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC- 62865 ||||||||| |||| |||||| |||| | ||||| | | || |||| Sbjct 997330 CCGATTGAGATTATGAACAAGAACTTTGGTCACAGAATGGAGTTTCCGGAGATTAAATGT 997389 Query 62866 -GCCCATCTATTACAAACATGTTCAAGGCAACA-------------GATGCCAGATTACA 62911 | || || || || | | |||| ||| || |||| |||||| Sbjct 997390 TGGCCGTCCATCACTAGCCCTCTCAACATAACTAGGTAATCCTAACGAGGCCAAATTACA 997449 Query 62912 AACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACAC 62969 ||||| | |||| | || | ||||| | | |||| ||||||||| | Sbjct 997450 TACGGCAATTTCATC--CTTCGATGAATATTCAACAACCTCACAGCAAAGATTCGAGGAT 997507 Query 62970 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63029 ||||| ||||| || || ||||| || ||| ||| || |||||||||||||| | | Sbjct 997508 TTGATGGTTCCCAAGTTCTGTTGGTTCGACTTGGAGTTGCAGGCATCCTTATAAAGCAAG 997567 Query 63030 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 63089 || ||||| || |||||| |||| || || ||| | ||| || |||||| | Sbjct 997568 AAAGGAGTTCCTGTTTCAGTCTGTGAAATTAGGATCTTCTCCCACACTTTACGAGCCCTC 997627 Query 63090 ATTATA-GATTTGTATCTCCTTTCTCTTTCGTATAGTGTA-TACAATCGTTCGAACTCGT 63147 | | || | | ||| | || | ||| || | || | | |||| || | Sbjct 997628 ACCTGACGAATATAAGATCCCCGCGATT-CATATT-TGCAGTAGAGTTGTTCAAAGGATT 997685 Query 63148 CTCCCCAAACATTGTCC---AATCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63204 ||||||| || ||| ||||||||||| |||| | | || |||| || Sbjct 997686 TTCCCCAA-CA--GTCAGATAATCCAGGACAGGTATCCTCCGAAAACAGGCTCCACACTT 997742 Query 63205 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCT 63263 | || | | ||| |||||||| || | ||| || ||||||||||| ||| ||||| || Sbjct 997743 CATCGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGAGC-ATAGAATAGGTCC 997801 Query 63264 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 63323 |||| || || || || || |||||||| | || | ||| |||| ||||| Sbjct 997802 CTGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAGTCTAAGAATTCCATGATATCC 997861 Query 63324 GAATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63381 | |||||||||||| | ||| | | ||| | ||||| ||||| || || ||||| | Sbjct 997862 GCATGCCACGGTTCTA--GATAGGCACAGATAGCACCAGGTCGTTTATTACCACCCTGGT 997919 Query 63382 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63441 | | ||| |||||| | || | |||| || ||| || | ||| || ||||| | Sbjct 997920 CAACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAATTCCACTTGATTCTC 997979 Query 63442 CATTGGTACCGGAGATATAGCTTCC 63466 |||||||||| || |||||| |||| Sbjct 997980 CATTGGTACCCGATATATAGGTTCC 998004 >seq23 Length=838141 Score = 233 bits (258), Expect = 2e-56 Identities = 580/869 (67%), Gaps = 20/869 (2%) Strand=Plus/Minus Query 33034 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33093 |||||||| || || || ||||| ||||||| || |||||||||||||| || ||||| Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955 Query 33094 GTAACATTATAAAtttttttAAATCCCAATTC-AGAAATCAATCTATCCGCGACGAATTC 33152 ||| | || || | ||| | | || | || || |||||| || || ||| || Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAA-CAATCTGTCGGCACAGAAGTC 742896 Query 33153 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGT 33212 | |||| | |||||| ||||||||||| || | || ||| || | || | | Sbjct 742895 AACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTCT 742836 Query 33213 A-AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCAC 33271 ||||| |||| |||||| || || || || || || | | | ||| | | Sbjct 742835 CCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCATGATCTTGGTGATGATTTTCTTAT 742777 Query 33272 TCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGT 33331 | || || || ||||| || | | || ||||||||| || | ||| |||| Sbjct 742776 TAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAACCTTCGT 742717 Query 33332 CTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 33391 |||| | || |||||||| || || || || || ||||| | || | ||| || |||| Sbjct 742716 CTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCTTTAGCC 742657 Query 33392 AAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAA 33451 |||| |||| || ||||| || || ||||||| ||||| | || || ||||| | | Sbjct 742656 AAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGGCGACCA 742597 Query 33452 GTCTCTCTCCATAACCGGC------GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 33505 ||| ||| | || || ||||| || ||||| ||||||| |||| Sbjct 742596 ATCTTTCTGCGTATAGTGCATCCTTGCTGT--TG-ATCCAACGAAGAGCCCATAATGCCT 742540 Query 33506 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTAT 33565 | | || | || || ||||| ||||||||||| | || | ||| || ||| Sbjct 742539 TTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCTTAT 742480 Query 33566 CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33625 || | || || || || | ||| ||| ||| | || ||||| ||||| || | | Sbjct 742479 CTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCCACCATGA 742420 Query 33626 TCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC-TTCTGTACAAAATCGTTCC 33684 |||| ||||||||||| |||||||| | | ||| || |||||| || | || Sbjct 742419 TCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAGT-TTTGA 742361 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 |||||| |||| || || || ||| ||| ||||| || ||||| ||| || || Sbjct 742360 ATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGCGATG 742301 Query 33745 AAATATTTTTCGTCTGGTGTTA----GTTTATTCCAATCATTGATATCTTTAGATATATC 33800 |||||| |||| | ||| ||| || ||||| ||| | ||| || || | ||| Sbjct 742300 AAATATCTTTCAT-TGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGAGAGATC 742242 Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 | |||||| | ||||| || ||||| || ||||| || ||||| | ||| || |||| Sbjct 742241 GATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAATATCATC 742182 Query 33861 ATATTGGATTGGGAAAATAACAAATCTAT 33889 |||||||| ||||| || |||||||||| Sbjct 742181 GTATTGGATAGGGAACATGACAAATCTAT 742153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946608200160