Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12 179 1e-39 seq16 105 2e-17 >seq12 Length=1129233 Score = 179 bits (198), Expect = 1e-39 Identities = 514/781 (66%), Gaps = 16/781 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | ||||| ||| |||||| || || | |||| ||||||||||| Sbjct 52281 TTCACCCACGCTTCTCCAACTTTGTTCAATGCGGGTACCCCACATCCGCAGATGTCTTCC 52340 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||| | | |||||||||||||| || || || |||| || || | || | Sbjct 52341 TGCTTTTTGGTTGCGATGAAGGACGATTCTATTGAAGGCATCTACGATACTTTGAAAGAG 52400 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-C 363725 ||||| | ||||| |||| || ||||| |||||| | || ||||| ||||||| | Sbjct 52401 TGTGCCTTGATTTCGAAGACCGCCGGCGGTATTGGTATGCATATTCACAACGTTCGTGCC 52460 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | |||||| ||| || || ||| ||||| | |||| ||| |||| Sbjct 52461 ACTG-GCTCTTACATCGCCGGTACCAACGGTACCTCAAATGGTATTATTCCAATGATTCG 52519 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGCG 363843 ||| || |||| ||||| || ||||||||||| || || | |||| | ||| || Sbjct 52520 TGTTTTCAACAACACTGCCAGATACGTCGACCAAGGAGGTAACAAAAGACC--AGGTGCC 52577 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 |||| ||||| | || || || || || || || || || |||| || | || Sbjct 52578 ATTGCAGTGTATATGGAACCATGGCACGCAGACATCTTCGATTTCATTGATATCAGAAAG 52637 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 || || || |||||| | ||||| |||||| ||||| || || ||| || | ||| Sbjct 52638 AATCATGGTAAGGAGGAAATCCGTGCCCGTGATTTGTTCCCAGCCCTATGGATTCCCGAC 52697 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||||| || || |||| | | ||| | || |||| ||| |||| Sbjct 52698 TTGTTCATGAAGCGTGTTGA-GCAGAACGGTCAATGGACTCTATTTTCGCCATCCGAAGC 52756 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 ||| || ||||| || || | || ||||| | || || ||||| || || Sbjct 52757 TCCGGGCCTTTCTGACGTGTACGGAGACGAGTTTGAGGCCTTATACACGCGTTACGAGAG 52816 Query 364083 GGAGGGAAAGGCT---CGTA-AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 ||||||| | | |||| | ||| || |||||| | |||| || ||| Sbjct 52817 GGAGGGACGCGGTAGACGTACCGTCAA----GGCTCAGAAGTTGTGGTACCAGATTTTGG 52872 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | | |||| ||| || || || || | ||| | ||||| ||| | || ||| | ||| Sbjct 52873 AAGCCCAGACTGAAACCGGTACTCCATTCATGCTCTACAAGGATGCATGTAACAGAAAGA 52932 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 ||||| ||| || | ||||| || || ||| |||| |||||| | || | Sbjct 52933 GTAACCAACAGAACTTGGGTACCATCAAGTCCTCGAACTTATGCTGTGAGATTGTCGAGT 52992 Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG 364318 || | || || ||||| |||| || |||||| | || || | || ||||| |||| Sbjct 52993 ACTCAGCACCAGACGAAACTGGTGTCTGTAACTTGGCTTCTCTTTGCCTCCCGGCCTTTG 53052 Query 364319 T 364319 | Sbjct 53053 T 53053 >seq16 Length=109755 Score = 105 bits (116), Expect = 2e-17 Identities = 134/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 111732 TGCCAAATGTATCAGCGATC-TGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||||| ||||| ||| |||| ||| ||||| |||||||||||||| ||||| ||||| Sbjct 15001 TGCCAGATGTACCAGAGATCGTGC-GATATGGGTCTTGGTGTTCCCTTTAACATTGCCTC 15059 Query 111791 TTACGCACTACTTACTTGCTTAATCG-CTCATTTTACAAATCTCAAACCGGGTGAATTCA 111849 |||||| ||||| || | | | || | | || | | | ||| | |||| ||||||||| Sbjct 15060 TTACGCTCTACTCACCTACATGATAGCCACAGTGTGC-AATATGGAACCTGGTGAATTCG 15118 Query 111850 TTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAG 111908 | || || || |||||| | || || ||| ||||| | || || |||||||||||| Sbjct 15119 TCCATGTCATGGGAGATTCTCACGTGTACTGTAACCATGTGGAAGCCCTTAAAACACAG 15177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352330859432