Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq45 116 3e-21 seq15 113 4e-20 seq1 95.1 1e-14 >seq45 Length=579175 Score = 116 bits (128), Expect = 3e-21 Identities = 174/246 (71%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 23972 TACTTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTAC 24031 |||||||| | | | ||||||||| | || || || || || || || || | ||||| Sbjct 355126 TACTTTTT--CAATAGAAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTAC 355069 Query 24032 CATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGA 24091 | | ||||||||| | || ||||| || | ||||| || |||||| || || || Sbjct 355068 CTTGGAAGTCGAGTCTTCTGATACCATTGACAATGTCAAGCAGAAGATTCAAGATAAGGA 355009 Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 || || || || ||||| |||||| |||| | | || |||||| | || || | ||| Sbjct 355008 GGGAATCCCACCAGATCAGCAGAGATTGATCTTTGCTGGTAAGCAATTGGAGGACGGCAG 354949 Query 24152 AAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAG 24211 || | ||| || ||||||||||| ||||| ||| | || || || | |||||||| Sbjct 354948 AACTTTGTCCGACTACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCAGATTGAG 354889 Query 24212 AGGAGG 24217 ||| || Sbjct 354888 AGGTGG 354883 >seq15 Length=115448 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||| ||||| || | || ||| | ||||||||| | Sbjct 17 ATGCAGATTTTCGTCAAGACATTGACTGGTAAGACCATCACCTTGGAAGTCGAGTCTTCT 76 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||||||||||| || |||||||| || ||||| ||||| Sbjct 77 GATACGATCGATAATGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 136 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | ||| ||||| | ||||||| |||| | || || || Sbjct 137 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 196 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || ||||| |||| || || || ||||||||||| || Sbjct 197 ATCCAGAAGGAGTCTACTCTTCACTTGGTTTTGAGATTGAGAGGTGG 243 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || |||||||| || ||| | || ||| | |||||||| | Sbjct 245 ATGCAGATTTTCGTCAAGACATTAACAGGCAAAACCATCACCTTGGAAGTCGAATCTTCA 304 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || ||||||||||| || |||||||| || ||||| ||||| Sbjct 305 GACACGATCGATAACGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 364 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | ||| ||||| | ||||||| |||| | || || || Sbjct 365 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 424 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || ||||| |||| || || || || ||||| || || Sbjct 425 ATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGGTTGAGGGGTGG 471 >seq1 Length=1746572 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || || || || || || || | |||||| | || || ||| | Sbjct 814062 CAATATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTC 814003 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||| || || | ||||| || ||||| ||||| || || || || || || Sbjct 814002 TTCTGACACTATTGACAATGTCAAGCAGAAGATCCAAGACAAGGAGGGAATTCCACCTGA 813943 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGAT 24164 ||| |||||| |||| | | || ||||| | || |||| ||||| ||||| | Sbjct 813942 TCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACATTGTCAG--AC 813885 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || || ||||| || | || ||||| || ||||||||||| || Sbjct 813884 TACAACATCCAGAAGGAATCCACCTTGCACTTAGTCTTGAGATTGAGAGGTGG 813832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935601771780