Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq52 131 1e-25
seq15 120 2e-22
seq45 109 4e-19
seq1 84.2 1e-11
>seq52
Length=7685
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 5287 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 5228
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||||| |||||||||||
Sbjct 5227 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 5193
Score = 98.7 bits (108), Expect = 7e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| ||||||||| |||||||||||| |
Sbjct 3294 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTTGCTATCGGTCTCTC 3235
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||||||
Sbjct 3234 GCCCATATTTAGCCTTA 3218
>seq15
Length=115448
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| ||||| |||||||| |||||| || |||||||| ||||
Sbjct 245 TACCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAG 186
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | | || ||||| || || |||||||| || | | || ||||| | |
Sbjct 185 AAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAG 126
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | |||||||| || || ||||| |||||||| | || ||||| | || |
Sbjct 125 GAATACCTTCTTTATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCGA 66
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || || || ||||| ||||| || || ||||| ||||||||
Sbjct 65 CTTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17
>seq45
Length=579175
Score = 109 bits (120), Expect = 4e-19
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | | ||||| || | || ||||||||||| ||||| || |
Sbjct 354881 TACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCGG 354940
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||||| | |||| || ||||| || || ||||| || | | || ||||| | |
Sbjct 354941 ACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTG 355000
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || || ||| || ||||| ||||| | | ||||| | || |
Sbjct 355001 GGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTGTCAATGGTATCAGAAGACTCGA 355060
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323
|||| || ||||| || |||||||||||||| || ||||| || ||||| || ||
Sbjct 355061 CTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTCTA 355115
>seq1
Length=1746572
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | ||| || || || | ||| ||||| || || ||||| || ||
Sbjct 813831 ACCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGA 813890
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| | | || || || || || || ||||| || | | || ||||| | ||
Sbjct 813891 CAATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGG 813950
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| || || ||||| || || ||||| ||||| | | ||| || | |||||
Sbjct 813951 AATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAAC 814010
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || ||||| || ||||| |||||||| || ||||| || ||||| ||
Sbjct 814011 CTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATT 814061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946889755156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |