Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq52 131 1e-25 seq15 120 2e-22 seq45 109 4e-19 seq1 84.2 1e-11 >seq52 Length=7685 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 5287 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 5228 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 5227 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 5193 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| ||||||||| |||||||||||| | Sbjct 3294 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTTGCTATCGGTCTCTC 3235 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 3234 GCCCATATTTAGCCTTA 3218 >seq15 Length=115448 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| ||||| |||||||| |||||| || |||||||| |||| Sbjct 245 TACCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAG 186 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || ||||| || || |||||||| || | | || ||||| | | Sbjct 185 AAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAG 126 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || || ||||| |||||||| | || ||||| | || | Sbjct 125 GAATACCTTCTTTATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCGA 66 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || ||||| ||||| || || ||||| |||||||| Sbjct 65 CTTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17 >seq45 Length=579175 Score = 109 bits (120), Expect = 4e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | ||||| || | || ||||||||||| ||||| || | Sbjct 354881 TACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCGG 354940 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | |||| || ||||| || || ||||| || | | || ||||| | | Sbjct 354941 ACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTG 355000 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || || ||| || ||||| ||||| | | ||||| | || | Sbjct 355001 GGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTGTCAATGGTATCAGAAGACTCGA 355060 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 |||| || ||||| || |||||||||||||| || ||||| || ||||| || || Sbjct 355061 CTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTCTA 355115 >seq1 Length=1746572 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| || || || | ||| ||||| || || ||||| || || Sbjct 813831 ACCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGA 813890 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | || || || || || || ||||| || | | || ||||| | || Sbjct 813891 CAATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGG 813950 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || ||||| || || ||||| ||||| | | ||| || | ||||| Sbjct 813951 AATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAAC 814010 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || ||||| || ||||| |||||||| || ||||| || ||||| || Sbjct 814011 CTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATT 814061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946889755156