Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq12 282 5e-71 seq23 226 4e-54 >seq12 Length=1129233 Score = 282 bits (312), Expect = 5e-71 Identities = 754/1143 (66%), Gaps = 22/1143 (2%) Strand=Plus/Minus Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 62882 |||||||||| || || || ||||| ||||||||| ||||||| |||||||| || || | Sbjct 52962 ACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCA 52903 Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCC 62941 ||||||||||||| |||||| |||| | ||| | |||| | ||| | | || ||||| Sbjct 52902 TGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCT-GAGCC 52844 Query 62942 TTTATTATAGATTTGTATCTCTTTTCTC--TTTCGTATAGTGTATACAATCGTTCGAACT 62999 || | || | | | | | | ||| | ||||| | || || || || |||| Sbjct 52843 TTGACGGTACGTCT--ACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACT 52786 Query 63000 CGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63059 ||||||| | || | || || ||| ||| || | | | | ||| | | Sbjct 52785 CGTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGAC 52726 Query 63060 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63119 ||| | || || || ||||| || | || |||||||| || ||| || | ||| | Sbjct 52725 CGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCAC 52666 Query 63120 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63179 || | |||||| || || ||||||| | | ||| | ||| | | || || | Sbjct 52665 GGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTG 52606 Query 63180 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63239 ||||| ||||||| || | || || | || || | |||||| ||||| || || | Sbjct 52605 CGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGA 52546 Query 63240 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 63299 |||||| || ||||| || |||| | | |||||||||||||||||| || ||||| | Sbjct 52545 CGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGT 52486 Query 63300 TGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63359 |||| || | ||| || ||| ||||||||| || ||| | ||| || || | Sbjct 52485 TGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGC 52426 Query 63360 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 63419 | || | || || || || || || ||| || ||||| |||||||| || ||| || Sbjct 52425 CGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAAT 52366 Query 63420 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63479 | ||| |||| || | ||| ||| |||||| || || | || |||||||| | Sbjct 52365 CGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGA 52306 Query 63480 ATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63539 | || || ||||||||||| || || | || || | ||| || || ||||| | Sbjct 52305 ACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTC----G 52250 Query 63540 CTGAGTCT----ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63595 ||| ||| ||||| ||||||||| || || || | ||| | || || || Sbjct 52249 ATGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGT 52190 Query 63596 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63655 ||||| || | | || || ||| |||| | ||||| ||||| ||||| ||| Sbjct 52189 GGTCTCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAA 52130 Query 63656 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTA 63715 ||||| |||||||| ||||| || |||||| |||| | ||||| | | ||| || Sbjct 52129 CCAAAGTAGTTGTAGTTGAAGTCACGGTCGTAATTAATGGCAGAGTTCAACTCATCTTTG 52070 Query 63716 TATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTA 63775 | | | | ||| || ||||| || | |||||| | ||| |||| Sbjct 52069 TGTCTCATCACTGTGTCATAGGTAAGTTGCGAGACCATAGGACATGCCTTCTTGGTTTTC 52010 Query 63776 GGATTGACATAGT---TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCT 63832 ||||| ||||| || | | |||| | || || || ||||| ||||| | Sbjct 52009 GGATT---ATAGTAACTGTAGAGCTCCTGGACAACATCCGAGAAGAGTTTCTTTGTCTGC 51953 Query 63833 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 63892 ||||| | ||| || | ||| | ||| ||||| | |||||||||||| ||||| ||| Sbjct 51952 TTGTGCAAATTCGAAATGGCGAGTCTGGCGGCCAAAATGGCATAATCAGGATGGATCGTA 51893 Query 63893 GTACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATT 63951 || || || || || | || |||| || | | || ||||| || || || || || | Sbjct 51892 GT-CATGTACGCAGCGGTCTCAGCTGTCAAATTATCTAATTCAACTGTGGTAACCCCCTC 51834 Query 63952 ATA 63954 ||| Sbjct 51833 ATA 51831 Score = 140 bits (154), Expect = 4e-28 Identities = 598/928 (64%), Gaps = 43/928 (5%) Strand=Plus/Plus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 ||||| |||| | || ||||| ||||| ||| ||| || || | || || || Sbjct 997091 GATCCCTCATAGCTTTCATATGGCCCTTCTTTCATAGCAAGCTCCATAGATGCTTCCAAG 997150 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 || || | ||| ||||||| |||||||| | ||| || | | ||| | || || Sbjct 997151 GCCCCATGATAGATGGTTTGGAAGATCTCCAAATTGAGTCGTCTGGATTCTCGACTTCCA 997210 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || || | || | || |||||| ||||| | ||| ||||| |||| | | || || Sbjct 997211 AACGGTAACTTCATTTCAAAAAACGCATCTGCAAGTCCCTGAACTCCAACAGCAATTGGC 997270 Query 62603 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62662 || || || ||||||||| ||| |||| | |||||| | |||||| | Sbjct 997271 CTGTGCTTCATATTAGAGACCTCACATTCTTTCAGAGGATATGCTCCGACATCTATGACC 997330 Query 62663 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-- 62720 ||||||||| |||| |||||| |||| | ||||| | | || |||| Sbjct 997331 CGATTGAGATTATGAACAAGAACTTTGGTCACAGAATGGAGTTTCCGGAGATTAAATGTT 997390 Query 62721 GCCCATCTATTACAA---------ACAT-----GTTCAATGCAACAGATGCCAGATTACA 62766 | || || || || | |||| | | ||| | | || |||| |||||| Sbjct 997391 GGCCGTCCATCACTAGCCCTCTCAACATAACTAGGT-AATCCTAACGAGGCCAAATTACA 997449 Query 62767 AACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACAC 62824 ||||| | |||| | || | ||||| | | |||| ||||||||| | Sbjct 997450 TACGGCAATTTCATC--CTTCGATGAATATTCAACAACCTCACAGCAAAGATTCGAGGAT 997507 Query 62825 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 62884 ||||||||||| || || ||||| || ||| ||| || |||||||||||||| | | Sbjct 997508 TTGATGGTTCCCAAGTTCTGTTGGTTCGACTTGGAGTTGCAGGCATCCTTATAAAGCAAG 997567 Query 62885 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 62944 || ||||| || |||||| |||| || || ||| | ||| || |||||| | Sbjct 997568 AAAGGAGTTCCTGTTTCAGTCTGTGAAATTAGGATCTTCTCCCACACTTTACGAGCCCTC 997627 Query 62945 A--TTATAGATTTGT-ATCTCTTTTCTCT-TTCGTATAGTGTA-TACAATCGTTCGAACT 62999 | | | || | ||| | | | ||| ||| || | || | | |||| || Sbjct 997628 ACCTGACGAATATAAGATCCC----CGCGATTCATATT-TGCAGTAGAGTTGTTCAAAGG 997682 Query 63000 CGTCTCCCCAAACATTGTCC---AGTCCAGGACATTCATCCGGACACATCAACGACCACT 63056 | ||||||| || ||| | ||||||||| |||| | | || |||| Sbjct 997683 ATTTTCCCCAA-CA--GTCAGATAATCCAGGACAGGTATCCTCCGAAAACAGGCTCCACA 997739 Query 63057 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGA 63115 || | || | | ||| |||||||| || | ||| || ||||||||||| ||| ||||| Sbjct 997740 CTTCATCGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGAGC-ATAGAATAGG 997798 Query 63116 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 63175 || |||| || || || || || |||||||| | || | ||| |||| ||| Sbjct 997799 TCCCTGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAGTCTAAGAATTCCATGATA 997858 Query 63176 TCAGAATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCCT 63233 || | |||||||||||| | ||| | | ||| | ||||| ||||| || || |||| Sbjct 997859 TCCGCATGCCACGGTTCTA--GATAGGCACAGATAGCACCAGGTCGTTTATTACCACCCT 997916 Query 63234 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 63293 | || | ||| |||||| | || | |||| || ||| || | ||| ||| | ||| Sbjct 997917 GGTCAACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAATTCCACTTGATT 997976 Query 63294 TACCATTGGTCCCTGAGATATAGCTTCC 63321 |||||||| || || |||||| |||| Sbjct 997977 CTCCATTGGTACCCGATATATAGGTTCC 998004 >seq23 Length=838141 Score = 226 bits (250), Expect = 4e-54 Identities = 586/877 (67%), Gaps = 36/877 (4%) Strand=Plus/Minus Query 32391 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG 32450 |||||||| || || || || || | ||||| || ||||||||||||||||||||||| Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955 Query 32451 GTAACATTATAAAtttttttAAATCCCAATTC-AGAAATCAATCTATCTGCGACA-AATT 32508 ||| | || || | ||| | | || | || || |||||| || || ||| || | Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAA-CAATCTGTCGGC-ACAGAAGT 742897 Query 32509 CTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAG 32568 | | |||| | |||||| ||||||||||| || | || ||| || | || | Sbjct 742896 CAACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTC 742837 Query 32569 TA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTG-----TTT 32622 | ||||| |||| ||||||| || || || || || |||||| || ||| Sbjct 742836 TCCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCAT----GATCTTGGTGATGATTTT 742782 Query 32623 CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGAC 32682 ||| | | || || | ||||| || | | || ||||||||| |||| || Sbjct 742781 CTT-ATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAAC 742723 Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 | |||||||| | || | |||||| || || || || || ||||| | || | ||| | Sbjct 742722 CTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCT 742663 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| |||| ||||||||| || || ||||| | ||||| | || || |||| Sbjct 742662 TTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGG 742603 Query 32803 CAATAAGTCTCTCTCCATAACCGGC------GCTGTCATGTATCCACTTTTGAGCCCAAT 32856 | | | ||| ||| | || || ||||| || ||||| ||||||| Sbjct 742602 CGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGT--TG-ATCCAACGAAGAGCCCATA 742546 Query 32857 CGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCAT 32916 ||||| | || | || || || || || |||||||| | || | ||| | Sbjct 742545 ATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCCT 742486 Query 32917 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 32976 | ||||| | || || || |||| ||| ||| ||| | || ||||| ||||| || | Sbjct 742485 TCTTATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCCA 742426 Query 32977 TGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTAC-TTCTGTACAAAAT 33035 || || |||||||||||| |||||||| | | ||| || |||||| || Sbjct 742425 CCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAA-- 742368 Query 33036 CGTTCTG--CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 33093 ||| || ||||| |||| || || || ||| ||| ||||| || ||||| ||| Sbjct 742367 -GTTTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACAC 742309 Query 33094 GTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCAATCATTGATATCTTTA 33149 || || |||||| |||| | ||| ||| || ||||| ||| | ||| || Sbjct 742308 GTGCGATGAAATATCTTTCAT-TGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTT 742250 Query 33150 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 33209 || | ||| | |||||| | ||||| || ||||| || ||||| || ||||| | ||| Sbjct 742249 GAGAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAA 742190 Query 33210 ATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 33246 || |||| ||||| || || || || |||||||||| Sbjct 742189 ATATCATCGTATTGGATAGGGAACATGACAAATCTAT 742153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631398049600