Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq15 187 5e-42 seq1 141 2e-28 seq45 138 2e-27 >seq15 Length=115448 Score = 187 bits (206), Expect = 5e-42 Identities = 169/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| || || ||||| || ||||| || || || || ||||| || ||||| Sbjct 457 CAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATC 398 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||||||||| ||||| || || | ||| || || || || ||||| ||||| || || Sbjct 397 TTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATC 338 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| |||||| || ||| ||||| ||||||| ||||| ||||||||||||||||| Sbjct 337 TTGGATCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATGGT 278 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || | ||||||||||| |||||||| Sbjct 277 TTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| || || ||||| || ||||| || || || || ||||| || ||||| Sbjct 229 CAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATC 170 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||||||||| ||||| || || | ||| || || || || ||||| ||||| || || Sbjct 169 TTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATC 110 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| |||||| || || ||||| || || | || || ||||||||||||||||| Sbjct 109 TTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCGACTTCCAAGGTGATGGT 50 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||||||||| |||||||| Sbjct 49 CTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17 >seq1 Length=1746572 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || ||||| | ||||| || || |||||||| || || || | ||| || ||||| Sbjct 813846 CAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTTCTGCCATC 813905 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 || |||||||| || || || || | ||| || || || |||||||| || |||||||| Sbjct 813906 CTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCTTGTC 813965 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| |||||| || || ||||| | || || || |||||||| ||||| Sbjct 813966 TTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAACCTCCAAGGTAATGGT 814025 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||| ||||| || ||||| Sbjct 814026 CTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 814058 >seq45 Length=579175 Score = 138 bits (152), Expect = 2e-27 Identities = 162/218 (74%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| | || || || ||||| ||||| || ||||| | || || || || || Sbjct 354901 ACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCGGACAAAGTTCTGCCGTCCTCC 354960 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || || || || | ||| || || || ||||| || || ||||| |||||| Sbjct 354961 AATTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTATCTTGA 355020 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||| || ||||| || | || || ||||||||||| ||||| || Sbjct 355021 ATCTTCTGCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTAATGGTCTTA 355080 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATT 68470 ||||| | |||||| ||||| || |||||| | ||||| Sbjct 355081 CCCGTCAAGGTCTTAACGAAAATTTGCATT-TTCTATT 355117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621524458720