Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq12 140 3e-28 >seq12 Length=1129233 Score = 140 bits (154), Expect = 3e-28 Identities = 595/928 (64%), Gaps = 24/928 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||||| ||||| || || || | | || |||| Sbjct 52113 AACTACAACTACTTTGGTTTCAAAACCTTGGAGCGTTCCTATCTATTGAGAATCAATGGT 52172 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| | ||| |||| || || ||| | ||| | || ||| |||| ||||| || || Sbjct 52173 AAAGTTGCAGAGAGACCACAACATCTGATTATGAGAGTTGCCGTCGGAATTCATGGTGAC 52232 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTAT---ACCATG 93891 || || || | || | | | | | || | | | || | ||| ||| Sbjct 52233 GATATCCCAAGAGTCATCGAGACCTATA---ACCTAATGTCCGAGCGTTATTTCACCCAC 52289 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || | || || ||||||| ||||| ||||| || ||||||||||| || || || Sbjct 52290 GCTTCTCCAACTTTGTTCAATGCGGGTACCCCACATCCGCAGATGTCTTCCTGCTTTTTG 52349 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| |||| ||| || || || || | ||| | | || || ||||| Sbjct 52350 GTTGCGATGAAGGACGATTCTATTGAAGGCATCTACGATACTTTGAAAGAGTGTGCCTTG 52409 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || || || ||| || || || || || | | ||| |||| ||||||| || || Sbjct 52410 ATTTCGAAGACCGCCGGCGGTATTGGTATGCATATTCACAACGTTCGTGCCACTGGCTCT 52469 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||||||||| || ||||| || || | | || ||| | || || |||||| Sbjct 52470 TACATCGCCGGTACCAACGGTACCTCAAATGGTATTATTCCAATGATTCGTGTTTTCAAC 52529 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || | ||||| ||||| || ||| | || ||| | | || || ||| Sbjct 52530 AACACTGCCAGATACGTCGACCAAGGAGGTAACAAAAGACCAGGTGCCATTGCAGTGTAT 52589 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | || || |||||||| ||| | | |||||| || | ||||||| || || || Sbjct 52590 ATGGAACCATGGCACGCAGACATCTTCGATTTCATTGATATCAGAAAGAATCATGGTAAG 52649 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||| | | ||| | || | ||| || || ||| | || ||| | || ||| Sbjct 52650 GA---GGAAATCCGTGCCCGTGATTTGTTCCCAGCCCTATGGATTCCCGACTTGTTCATG 52706 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || || ||| | ||| |||| ||| |||| || ||| ||| || || Sbjct 52707 AAGCGTGTTGAGCAGAACGGTCAATGGACTCTATTTTCGCCATCCGAAGCTCCGGGCCTT 52766 Query 94369 TCCGACGTTTGTGGA-TCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAA 94427 || ||||| | ||| || | ||||| | ||| || | |||||||| | |||| | Sbjct 52767 TCTGACGTGTACGGAGACGAG-TTTGAGGCCTTATACACGCGTTACGAGAGGGAGGG--A 52823 Query 94428 GGCCAGGAAG--GT--TATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGG 94483 || || || || | | ||| |||| ||||| | ||||| |||| | ||| Sbjct 52824 CGC--GGTAGACGTACCGTCAAGGCTCAGAAGTTGTGGTACCAGATTTTGGAAGCCCAGA 52881 Query 94484 TGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAG 94542 || || ||||| || | ||| | | |||||| | ||| ||| ||| ||||| Sbjct 52882 CTGAAACCGGTACTCCATTCATGCTCTACAAGGATGCATGT-AACAGAAAGAGTAACCAA 52940 Query 94543 CAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 ||| || | || |||||| |||||| | ||| |||||||||||||| | | Sbjct 52941 CAGAACTTGGGTACCATCAAGTCCTCGAACTTATGCTGTGAGATTGTCGAGTACTCAGCA 53000 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGG 94630 || ||||| | || ||| |||||| ||| Sbjct 53001 CCAGACGAAACTGGTGTCTGTAACTTGG 53028 Score = 104 bits (114), Expect = 2e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 ||||||||||| || | || | || |||||||| || |||||||||| | || Sbjct 997989 GGTACCAATGGAGAATCAAGTGGAATTGTGCCTATGCTGCGAGTCTTCAACAGTACCGCT 997930 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 | || || |||||||||||| | | ||| || || | |||||| || || Sbjct 997929 CAATATGTTGACCAGGGTGGTAATAAACGACCTGGTGCTATCTGTGCCTATCTAGAACCG 997870 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 ||||| ||||| | || ||| | ||| || |||||||||||| || || | | Sbjct 997869 TGGCATGCGGATATCATGGAATTCTTAGACTTGAAAAAGAACCACGGTAAGGAAGAGATG 997810 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 |||||||| ||||| ||||| ||||| ||| | ||||| | || |||||||| || || Sbjct 997809 AGGGCCAGGGACCTATTCTATGCTCTTTGGATCCCAGATTTGTTCATGAAACGTGTGGAA 997750 Query 94321 AA 94322 || Sbjct 997749 AA 997748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722730012960