Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq15 118 1e-21 seq45 105 6e-18 seq1 98.7 9e-16 >seq15 Length=115448 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 |||||| || | || || || || ||||| |||||||| || || | ||| || Sbjct 460 CCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACC 401 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || || || || || || | ||||||| ||||| || || ||||| |||||||| Sbjct 400 ATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTT 341 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 |||||| || |||||||| | || | || | ||||| ||||| |||||||| | || | Sbjct 340 ATCTTGGATCTTTTGTTTCA-CGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGA 282 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| |||| || || || ||||| ||||| Sbjct 281 TGGTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || || || || ||||| |||||||| || || | ||| || | Sbjct 231 CTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCA 172 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || || || || || || | ||||||| ||||| || || ||||| ||||||||| Sbjct 171 TCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTA 112 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || |||||||| | || | || || |||||||||||||| | || | Sbjct 111 TCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCGACTTCCAAGGTGATG 52 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || ||||| ||||| Sbjct 51 GTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17 >seq45 Length=579175 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| |||||||||||||| || || || ||| | ||| | || |||||||| Sbjct 354907 TGCAATGTTGATTCCTTTTGAATGTTGTAGTCGGACAAAGTTCTGCCGTCCTCCAATTGC 354966 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||||| || || || || || || ||||||||||| || Sbjct 354967 TTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTATCTTGAATCTTC 355026 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| || | ||| || |||||||||||||| | |||| || || || || Sbjct 355027 TGCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTAATGGTCTTACCCGTC 355086 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||||||||| Sbjct 355087 AAGGTCTTAACGAAAATTTGCAT 355109 >seq1 Length=1746572 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG--GTTTTAG 45183 ||||| |||| |||| || |||||||| ||||| || || || |||| ||| | Sbjct 813844 CTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTC--TGACAATGTTCTGC 813901 Query 45184 AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| ||||| || || || || | ||||||| ||||| || || ||||| || || | Sbjct 813902 CATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCT 813961 Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 | ||||| || || || |||| || | ||||| |||||||| || || | |||| Sbjct 813962 TGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAACCTCCAAGGTAA 814021 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || || || ||||||||||| Sbjct 814022 TGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 814058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002770596960