Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq15 118 1e-21
seq45 105 6e-18
seq1 98.7 9e-16
>seq15
Length=115448
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184
|||||| || | || || || || ||||| |||||||| || || | ||| ||
Sbjct 460 CCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACC 401
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| || || || || || || | ||||||| ||||| || || ||||| ||||||||
Sbjct 400 ATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTT 341
Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303
|||||| || |||||||| | || | || | ||||| ||||| |||||||| | || |
Sbjct 340 ATCTTGGATCTTTTGTTTCA-CGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGA 282
Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||| |||| || || || ||||| |||||
Sbjct 281 TGGTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185
||||| || | || || || || ||||| |||||||| || || | ||| || |
Sbjct 231 CTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCA 172
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| || || || || || || | ||||||| ||||| || || ||||| |||||||||
Sbjct 171 TCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTA 112
Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305
||||| || |||||||| | || | || || |||||||||||||| | || |
Sbjct 111 TCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCGACTTCCAAGGTGATG 52
Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | || || || ||||| |||||
Sbjct 51 GTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17
>seq45
Length=579175
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|||| |||||||||||||| || || || ||| | ||| | || ||||||||
Sbjct 354907 TGCAATGTTGATTCCTTTTGAATGTTGTAGTCGGACAAAGTTCTGCCGTCCTCCAATTGC 354966
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | ||||||| ||||| || || || || || || ||||||||||| ||
Sbjct 354967 TTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTATCTTGAATCTTC 355026
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|| |||| || | ||| || |||||||||||||| | |||| || || || ||
Sbjct 355027 TGCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTAATGGTCTTACCCGTC 355086
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
| || || || |||||||||||
Sbjct 355087 AAGGTCTTAACGAAAATTTGCAT 355109
>seq1
Length=1746572
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG--GTTTTAG 45183
||||| |||| |||| || |||||||| ||||| || || || |||| ||| |
Sbjct 813844 CTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTC--TGACAATGTTCTGC 813901
Query 45184 AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243
||| ||||| || || || || | ||||||| ||||| || || ||||| || || |
Sbjct 813902 CATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCT 813961
Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303
| ||||| || || || |||| || | ||||| |||||||| || || | ||||
Sbjct 813962 TGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAACCTCCAAGGTAA 814021
Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| | || || || |||||||||||
Sbjct 814022 TGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 814058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452002770596960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |