Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12 205 1e-47 seq4 82.4 9e-11 >seq12 Length=1129233 Score = 205 bits (226), Expect = 1e-47 Identities = 1151/1808 (64%), Gaps = 41/1808 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || ||||| ||||||| ||||||| | || | ||||| || | ||| || Sbjct 53912 GTAGTACATACCAGTCTTTAGCCCCTTCTTCCAGCCGTAGAAGTGCATCGAAGTCAATTT 53853 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | || ||| | | | || |||||| || || ||||||| | || || Sbjct 53852 ACCCATGGTAGGAGCCTGTAAGTGGATGTTCATCGACTGCGACTGATCGAGGTAGGCACC 53793 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 | || || |||||||| || | | |||| || ||||| ||||| | |||||| Sbjct 53792 TCTGTCAGCTGCCATATCGATGATAGCCTTTTGTGGGAGCTCCCAGACAGTACGGTAGAG 53733 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 || || || | |||||| | | | ||| ||||| || || || | ||| | Sbjct 53732 CTTTTTTATCTTATCTGGAACGTTTGGCAAATTCTGGATCGAACCGT-TGTCGTGAATAA 53674 Query 115803 GAGA-TCCTTCAT---ATCCTTTGACCAGAGACCAATCTTCTTGAGATC-CTCCACGAGG 115857 | | | |||||| ||| || ||||| ||| || | | || ||| || | | Sbjct 53673 TAAAGTTCTTCATGGCATCATT---CCAGATACCCATATCGACAAAGTCTCTCAAC-ATG 53618 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 | |||||| | |||||||| ||||| | |||| | |||||||| | ||| Sbjct 53617 TAAGGATTGACGATCTGGAACTCACCTGCGAGAACTCTTCTCTGGTAGATGTTCGAGGTG 53558 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 | |||||||||||||| || | |||| || |||| || || ||||| ||||| ||| Sbjct 53557 AAGGGCTCAAAGCACTCGTTATAGCCCATAATCTGGGAAGTAGAAGCTGTTGGCATTGGT 53498 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAG 116037 |||| | || ||| | | ||| | ||| ||| | | ||||| Sbjct 53497 GCCACCAAGAGCGAGTTTCTCAAACCGTTCTTGGCAATCTTGGACTTCAAAGAATCCCAA 53438 Query 116038 TCGTAGTTGAGCTTT-GTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGC 116096 || | || | | | || | |||| | ||| || || | | || | ||| || Sbjct 53437 TCCCAAA-GATCGGTAGGCTTCTTACCCCATAAATCGAATTGTAATAAGCCCTTGGATGC 53379 Query 116097 TGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTC 116156 || || |||||| | ||||||||| ||||| | || |||| ||| ||| ||||| Sbjct 53378 AGGAGAACCCTCATAGCTCTCATATGTACCCTCCTCTTCGGCCAGTTCCGAGGATGCCTC 53319 Query 116157 GAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGC-CTCGTCG 116214 ||| || ||||| || || ||||| || || || |||| || | || || | | Sbjct 53318 GAGAGCAGCGTGGTAAATAGTCTCGAAGATTTGAATGTTCAACTGACGTGCTTCTGGACT 53259 Query 116215 GAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274 | ||||||| || || | | || || || | |||||| ||||| | | Sbjct 53258 G--TCAAACGGAAGGCGCATCTGGAAGAAGGTGTCGGCTAAACCTTGCACACCAACAGCG 53201 Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATC 116333 | ||| | | | ||| ||||| | || || ||| || |||||| | || || || Sbjct 53200 ACTGGTCTGTTACGCATGTTAGAGTAACGTGCC-TCTGGGACAGGATAATAGTTTCTGTC 53142 Query 116334 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 116393 || || | || | || || | ||| || | || | ||| | ||| ||| | | Sbjct 53141 AATGACACGGTTCAAGTTCCGAGTAAGAACTTTGGCAATCTTATGCAACTTCTCGAAGTT 53082 Query 116394 AAAACTGCGAG-TCTCTTC-----ATT-GACATACTTAGGAAGGGCGATTGACGCCAGAT 116446 | | |||| ||| ||| ||| |||| | || ||| | || |||| | Sbjct 53081 GTACCA-CGAGGTCTTTTCGTCAGATTCGACAAAGGCCGGGAGGCAAAGAGAAGCCAAGT 53023 Query 116447 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAAC 116506 |||| ||| || || || | | |||||| | ||| || || || || || Sbjct 53022 TACAGACACCAGTTTCGTCTGGTGCTGAGTACTCGACAATCTCACAGCATAAGTTCGAGG 52963 Query 116507 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCA 116566 ||| ||||| |||||||||| ||| || |||| ||||||| |||||||||||||||| Sbjct 52962 ACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCA 52903 Query 116567 TATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCT 116625 | |||| || || || || || |||| | | ||| | ||| | | || | | || Sbjct 52902 TGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCTGAGCCT 52843 Query 116626 GGCACAGTGGCGT-TGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTC 116684 | || || ||| | | || |||||| |||||| ||||| | |||||||||||| Sbjct 52842 TG-ACGGTA-CGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACTC 52785 Query 116685 TTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGAC 116743 || || ||| | || || || || || || | ||| | || |||| |||||||| Sbjct 52784 GTCTCCGTACA-CGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGAC 52726 Query 116744 CACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCC 116803 | || |||||| ||||||||||| | ||| || ||||| || || | ||| | ||| | Sbjct 52725 CGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCAC 52666 Query 116804 GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 116863 | || ||| || | || ||||| | | || | || || | ||| || | Sbjct 52665 GGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTG 52606 Query 116864 CGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTGCGACGACCAGCCTGGTTT 116919 ||||||| ||||||| ||||| || || | ||| ||| | ||| | |||| Sbjct 52605 CGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTG-TTACCTCCTTGGTCG 52547 Query 116920 ACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCA 116979 || || || || || ||| || || |||| ||||||||| ||||||| || || Sbjct 52546 ACGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCG 52487 Query 116980 TTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATAC 117037 || || || ||| || ||| | |||| | || | ||| || ||||||||||||| Sbjct 52486 TTGGTACCGGCGATGTAAGAGCC--AGTGGCACGAACGTTGTGAATATGCATACCAATAC 52429 Query 117038 CCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 117097 | || || ||| || || || ||||| | | | | ||||||| || || || | Sbjct 52428 CGCCGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAG 52369 Query 117098 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 117157 | || |||| | || | | |||||| ||||| || || ||| ||||| || | Sbjct 52368 AATCGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCAT 52309 Query 117158 TGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCA 117217 |||| | ||||| | |||||| |||| || | |||||| | |||||||| | Sbjct 52308 TGAACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCGA 52249 Query 117218 AGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGG 117277 ||| || || || || || ||||| |||| | || | ||||| || | ||| | Sbjct 52248 TGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTG 52189 Query 117278 GTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGAC 117337 || | || | |||||| || ||| || || ||||||||| |||| || Sbjct 52188 GTCTCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAAC 52129 Query 117338 CAAAATAG 117345 |||| ||| Sbjct 52128 CAAAGTAG 52121 >seq4 Length=283631 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 163365 TACGGTCGCGTGGCACCAAGATCTGGTCTCGCTGTGAAGAGCGGTATCCAAGTTGGTGCG 163424 ||||| || || ||||||||||| ||| | ||||| ||| ||| ||| | |||||| Sbjct 91197 TACGGCCGAGTTGCACCAAGATCAGGTTTGGCTGTCAAGCACGGGATCGATACCGGTGCG 91256 Query 163425 GGTGTTGTGGATCCAGACTACACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGACAC 163484 || ||||||||| | || || | ||| ||| | | ||||||| ||||||||| | | Sbjct 91257 GGCGTTGTGGATGCCGATTATAGAGGAGAATTGAGGATCGTTCTTTTCAATCACAGTGAT 91316 Query 163485 ATGGATTT 163492 | |||||| Sbjct 91317 AAGGATTT 91324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506617168160