Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5 147 9e-30 seq45 136 2e-26 seq7 136 2e-26 seq15 134 5e-26 seq1 120 1e-21 seq16 93.3 2e-13 >seq5 Length=270031 Score = 147 bits (162), Expect = 9e-30 Identities = 418/638 (66%), Gaps = 12/638 (2%) Strand=Plus/Minus Query 451842 TGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAA 451901 |||| |||||| | ||||| || | ||| ||||| || || |||||||||| Sbjct 240504 TGAAGCCTGTTCAGCAAGTTTTGAAAGATGCTAAAGTTGACGAATCCGAAATTGATGATG 240445 Query 451902 TTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATT 451961 |||| || || || |||||||| ||||||| || ||||||| || | | | | Sbjct 240444 TTGTTCTCGTTGGTGGTTCTACCAGAATTCCAAAGGTTCAAGAATTGCTTGAGACATTCT 240385 Query 451962 TTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTG 452021 || ||| || | | |||||| | ||||||||||||||||||||||||||||||| Sbjct 240384 TTAAAGGTAAGAAGGTTGCTAAGAGTATCAATCCTGATGAAGCTGTTGCATATGGTGCTG 240325 Query 452022 CAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAG 452081 | |||||||| | | || || | ||| ||| | || | | ||| || | || Sbjct 240324 CCGTTCAAGCTGGTGTTTTATCCGGTGAAGAAGGTG------TTGAAGACATCGTTTTGA 240271 Query 452082 TAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAA 452141 | ||||| | || | || | || |||| || | ||||| | ||||||| ||| | Sbjct 240270 TCGATGTCAATCCATTGACTTTGGGTATTGAGACTTCCGGTGGTGTTATGACTACTTTGA 240211 Query 452142 TTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATA 452201 |||| || ||| | ||||| || ||| || | ||| || || ||||| Sbjct 240210 TTAAGAGAAACACTCCAATTCCAACCAAGAAGTCGCAGATCTTTTCGACTGCTGTTGATA 240151 Query 452202 ACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATA 452261 |||||| | ||| ||||| || | ||| |||||| | || ||| | | || || | Sbjct 240150 ACCAACAAACTGTTCTGATTCAGGTTTATGAGGGAGAAAGAGCTATGGC-CAAG--AACA 240094 Query 452262 ATAAAC--TAGGAGAATTTACTCTTTCAAAC-ATTCCTCCTATGCCAAGGGGAACTCCTC 452318 |||| | | || || || || | | ||||| ||| ||||| ||| ||| | Sbjct 240093 ATAACCTGTTGGGTAAGTTCGAATTAAATGCAATTCCACCTGCTCCAAGAGGAGTTCCAC 240034 Query 452319 AAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAA 452378 | ||||| |||| | ||||| | ||||| || | || || ||| |||| | Sbjct 240033 AGATTGAGGTTACATTCACACTTGATTCCAATGGAATCTTAAAGGTCTCTGCCATTGATA 239974 Query 452379 AATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAG 452438 | | |||||||| | || || ||||| ||||| || ||| | || || || | Sbjct 239973 AGGGTACCGGAAAATCCAATTCCATCACCATTACCAATGACAAGAACAGATTGTCCAAGG 239914 Query 452439 AAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTC 452476 |||| |||||||| ||||| || |||| ||| | ||| Sbjct 239913 AAGAGATTGAAAAGATGGTGGAAGAAGGTGAACAGTTC 239876 Score = 131 bits (144), Expect = 7e-25 Identities = 206/294 (70%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| |||| ||||| || |||||||| ||||| ||| | || |||||| Sbjct 241027 GTTACCCATGCAGTTGTTACCGTTCCAGCCTATTTCAACGATGCCCAAAGACAGGCAACT 240968 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || ||||| || ||||| ||||| |||| | |||||||| || || Sbjct 240967 AAGGATGCTGGTACCATTGCCGGATTAAACGTTCTCAGAATCGTGAATGAACCAACTGCC 240908 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || ||| | || || || ||| || || | ||||||||| | || | || Sbjct 240907 GCAGCTATTGCCTACGGTTTAG----AT--AAGGGTGATGAAGAAAAACAGATCATTGTT 240854 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 | |||| | ||||||||||| ||| |||| || | || |||| || ||| | ||| Sbjct 240853 TATGATCTAGGTGGAGGAACCTTCGATGTTTCTCTATTGTCCATTGCAGGTGGTGCCTTT 240794 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||||| || || |||||||| ||| |||| || |||||| | ||| || Sbjct 240793 GAAGTTCTTGCCACTGCCGGTGATACCCATTTAGGTGGAGAAGATTTCGATTAT 240740 >seq45 Length=579175 Score = 136 bits (150), Expect = 2e-26 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || |||| ||||| || ||||| | || || || || || Sbjct 355110 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTC 355051 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | || || || |||||||||||||| ||||| || || ||||| Sbjct 355050 TGATACCATTGACAATGTCAAGCAGAAGATTCAAGATAAGGAGGGAATCCCACCAGATCA 354991 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || || | || || ||| | || || || ||||||||| | || || || Sbjct 354990 GCAGAGATTGATCTTTGCTGGTAAGCAATTGGAGGACGGCAGAACTTTGTCCGACTACAA 354931 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| ||||| | ||||| || | ||| ||||||| Sbjct 354930 CATTCAAAAGGAATCAACATTGCACTTGGTTCTCAGATTGAGAGG 354886 >seq7 Length=262925 Score = 136 bits (150), Expect = 2e-26 Identities = 339/507 (67%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || ||||||||||| ||||| || ||||| || ||||| ||||| ||||| ||||| Sbjct 220199 AACCCTGATGAAGCCGTTGCTTACGGTGCCGCTGTTCAGGCAGCCATTCTTTCAGGTGAT 220140 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | | || | ||| | |||| | ||||| || || |||||||||| | Sbjct 220139 ACTTCTTCTAAGACACAGGATTTGTTGTTGTTGGATGTGACCCCATTATCTCTTGGTATC 220080 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTT--CTATTCCTTGTA 452168 ||||| || ||||| | ||||| || ||||| | | ||||||| |||||||| | Sbjct 220079 GAAACTGCCGGTGGTGTTATGACCAAATTAAT--ACCAAGGAACTCTACTATTCCTACAA 220022 Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGT 452228 | ||| | | || || |||| ||| |||||||||||||| |||||||| | Sbjct 220021 AGAAGTCTGAGACTTTCTCTACATATTCTGACAACCAACCAGGTGTGTTGATTCAAGTTT 219962 Query 452229 TTGAAGGAGAACGTGCAATGACACGA--GATAATAATAAACTAGGAGAATTT--ACTCTT 452284 |||||| ||| | | | || |||| ||||| || | ||| | || | | | Sbjct 219961 ATGAAGGTGAAAGAACCA-GA-ACGAAGGATAACAACTTGTTGGGAAAGTTCGAATTGGT 219904 Query 452285 TCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGAT 452344 | | ||||||| ||||| || ||| || ||||| |||| | ||| | || Sbjct 219903 TGGTA--TTCCTCCAGCTCCAAGAGGTGTTCCACAGATTGAGGTTACTTTTGACATCGAC 219846 Query 452345 GCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATT 452404 ||||| |||||| | || ||| || |||||||| | || || | | || ||| Sbjct 219845 GCAAACGGTATTTTGAACGTGTCCGCCGTTGAAAAGGGTACCGGTAAGACTCAGAAGATT 219786 Query 452405 ACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAA 452464 ||||| || || ||||| | || || || || || ||||| || ||||| | || Sbjct 219785 ACAATCACCAACGATAAGGGTAGATTGTCAAAGGAGGAAATTGACAAGATGGTCAACGAT 219726 Query 452465 GCAGAAAAATTCAAGGATGATGATGAA 452491 |||||||||||||||| ||| || ||| Sbjct 219725 GCAGAAAAATTCAAGGCTGAGGACGAA 219699 Score = 123 bits (136), Expect = 1e-22 Identities = 253/372 (68%), Gaps = 13/372 (3%) Strand=Plus/Minus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 ||||||| || || || |||||||| | | || ||||| || || || || || Sbjct 220951 CTCCTGAGGAGATCTCTTCTATGGTCTTGAACAAGATGAAGGAGACTGCTGAGGCTTAC- 220893 Query 451302 TTGGTTCTCCAG-TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAA 451360 |||| | || ||| ||||| || |||||||||| || || |||||||| | || Sbjct 220892 TTGGGTGAGAAGATTAACGATGCCGTCGTTACTGTTCCTGCCTACTTCAATGACTCTCAG 220833 Query 451361 CGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAAT 451420 | || || || || ||||| || ||| ||||| | || ||| | |||| || ||| Sbjct 220832 AGACAGGCCACCAAGGATGCTGGTACCATTTCTGGTATGAACGTTATGAGAATAATCAAT 220773 Query 451421 GAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAG------AAACAGAA 451474 || ||||| || ||||| | || || || ||| || | ||| || ||||| Sbjct 220772 GAGCCTACTGCTGCTGCCATTGCTTACGGTTTAG----ATAAGAAGGGTACAAACCAGAA 220717 Query 451475 Gaaaaa-aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTC 451533 | | || ||| ||||| | |||||||| ||||| || ||| ||| ||| | | || Sbjct 220716 GGAGAAGAATGTTTTAATCTTTGATTTGGGTGGTGGTACTTTCGATGTCTCTCTTTTGTC 220657 Query 451534 AATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGA 451593 || || || || | |||||||| ||||| || |||||||||||| | || ||||| Sbjct 220656 CATCGATGAAGGTATCTTTGAAGTTAAGGCTACTGCTGGTGATACTCACTTGGGTGGTGA 220597 Query 451594 AGATATTGATAA 451605 || ||||||| Sbjct 220596 GGACTTTGATAA 220585 >seq15 Length=115448 Score = 134 bits (148), Expect = 5e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||| |||||||||| || || || | || || || || ||| Sbjct 17 ATGCAGATTTTCGTCAAGACATTGACTGGTAAGACCATCACCTTGGAAGTCGAGTCTTCT 76 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | |||||||| || |||||||| ||||| |||||||||||||| Sbjct 77 GATACGATCGATAATGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 136 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || || | |||||||| ||||| | | || || ||| Sbjct 137 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 196 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || |||||||| || || ||| ||||||| Sbjct 197 ATCCAGAAGGAGTCTACTCTTCACTTGGTTTTGAGATTGAGAGG 240 Score = 107 bits (118), Expect = 8e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||| | || || ||||| || || | || || ||||| || Sbjct 245 ATGCAGATTTTCGTCAAGACATTAACAGGCAAAACCATCACCTTGGAAGTCGAATCTTCA 304 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | |||||||| || |||||||| ||||| |||||||||||||| Sbjct 305 GACACGATCGATAACGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 364 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || || | |||||||| ||||| | | || || ||| Sbjct 365 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 424 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || |||||||| || || || |||| || Sbjct 425 ATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGGTTGAGGGG 468 >seq1 Length=1746572 Score = 120 bits (132), Expect = 1e-21 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||||||||| || |||| ||||| || ||||| | || ||||| || ||| Sbjct 814058 ATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCTTCT 813999 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || || || ||||| ||||| |||||||| |||||||| Sbjct 813998 GACACTATTGACAATGTCAAGCAGAAGATCCAAGACAAGGAGGGAATTCCACCTGATCAG 813939 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || || | || ||||| ||||| ||| | || || || Sbjct 813938 CAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACATTGTCAGACTACAAC 813879 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || | |||||||| || ||| ||||||| Sbjct 813878 ATCCAGAAGGAATCCACCTTGCACTTAGTCTTGAGATTGAGAGG 813835 >seq16 Length=109755 Score = 93.3 bits (102), Expect = 2e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 560251 AGAAGGTGATATGGGTAAAATTTATGGTTTTAACTGGAGACATTTTGGTGCTGATTATAT 560310 ||| | |||| ||||| || || || || | ||||||||||| |||||| | ||| | Sbjct 14742 AGAGGATGATTTGGGTCCTATCTACGGATTCCAATGGAGACATTTCGGTGCTAAGTATGT 14801 Query 560311 TAATTGTAACACCAATTATACAGGAAAAGGATTTGATCAACTTGTTAAAATTATTGAGGA 560370 ||||| | ||| | ||||| ||| |||||||||||||| | | || |||||| | Sbjct 14802 CGATTGTGATACCGACTATACCGGACAAGGATTTGATCAAATCGCTACCATTATTCATAC 14861 Query 560371 AATAAAAACCAATCCTTCTAGTAGAAGAATTTTAATGTCAGATT 560414 |||| |||||||||| ||||||||| || | |||| || Sbjct 14862 TCTAAAGACCAATCCTTACGATAGAAGAATCATACTATCAGCTT 14905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975716476144208