Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq12 223 4e-53 seq23 84.2 3e-11 >seq12 Length=1129233 Score = 223 bits (246), Expect = 4e-53 Identities = 1061/1658 (64%), Gaps = 61/1658 (4%) Strand=Plus/Plus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| |||||| | ||||| | ||||| || ||||| ||| || || ||||| Sbjct 52281 TTCACCCACGCTTCTCCAACTTTGTTCAATGCGGGTACCCCACATCCGCAGATGTCTTCC 52340 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || || | |||| | ||||| ||||| || | ||||| |||| ||| | | || Sbjct 52341 TGCTTTTTGGTTGCGATGAAGGACGATTCTATTGAAGGCATCTACGATACTTTGAAAGAG 52400 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 |||||| || || ||| || || ||||| || ||||| || || | || | ||| Sbjct 52401 TGTGCCTTGATTTCGAAGACCGCCGGCGGTATTGGTATGCATATTCACAACGTTCGTGCC 52460 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | ||| || ||||| || ||| ||| ||||||||||||||||| |||| Sbjct 52461 ACTGGCTCTTACATCGCCGGTACCAACGGTACCTCAAATGGTATTATTCCAATGATTCGT 52520 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG----GGATCTAT 112000 || || ||| ||| || | || || |||||| || | ||| || | || Sbjct 52521 GTTTTCAACAACACTGCCAGATACGTCGACCAAG-GAGGTAACAAAAGACCAGGTGCCAT 52579 Query 112001 CGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAA 112060 ||||| ||| | || ||||||||||| || ||| | || ||| |||| | | || Sbjct 52580 TGCAGTGTATATGGAACCATGGCACGCAGACATCTTCGATTTCATTGATATCAGAAAGAA 52639 Query 112061 CCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCT 112120 || ||| | ||||| || ||| ||| | ||| | || || |||||||| || | Sbjct 52640 TCATGGTAAGGAGGAAATCCGTGCCCGTGATTTGTTCCCAGCCCTATGGATTCCCGACTT 52699 Query 112121 CTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACC 112180 ||||||||| | |||||| ||| || | ||| |||| |||| ||| | | || || Sbjct 52700 GTTCATGAAGCGTGTTGAGCAGAACGGTCAATGGACTCTATTTTCGCCATCCGAAGCTCC 52759 Query 112181 CGGTCTCTCCGATGCCGTG---GGTGAGGAGTTTGAAGCCCTCTACACAAAGTAC--GAG 112235 || || || || |||| || || |||||||| ||| | ||||| ||| ||| Sbjct 52760 GGGCCTTTC---TGACGTGTACGGAGACGAGTTTGAGGCCTTATACACGCGTTACGAGAG 52816 Query 112236 GAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAA 112294 | || | ||| ||| || || | || | || | ||||| | ||| | | Sbjct 52817 GGAGGGACGCGGTAGAC--GTACCGT-CAAGGCTCAGAAGTTGTGGTACCAGATTTTGGA 52873 Query 112295 GTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAG 112354 | || || || || ||||| |||| ||||| ||||| || || |||||| |||||| Sbjct 52874 AGCCCAGACTGAAACCGGTACTCCATTCATGCTCTACAAGGATGCATGTAACAGAAAGAG 52933 Query 112355 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATT 112414 ||| ||| |||| |||||| |||||| || ||| | || || || | || | Sbjct 52934 TAACCAACAGAACTTGGGTACCATCAAGTCCTCGAACTTATGCTGTGAGATTGTCGAGTA 52993 Query 112415 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 ||| ||| || || | ||| |||||| | || || | ||||| | ||| Sbjct 52994 CTCAGCACCAGACGAAACTGGTGTCTGTAACTTGGCTTCTCTTTGCCTCCCGGCCTTTGT 53053 Query 112475 GGATCCAGAGACAAAGACAT-TTG-----ATTATGAAAAACTCCACGAAGTTACGAAAAC 112528 || | || |||||| | || | | || || | || | || | ||| Sbjct 53054 CGAATCTGACGAAAAGACCTCGTGGTACAACTTCGAGAAGTTGCATAAGATTGCCAAAGT 53113 Query 112529 TGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTC 112587 | | || ||| | ||| | || ||||| ||||| | ||| || || ||| || | Sbjct 53114 TCTTACTCGGAACTTGAACCGTGTCATTGACAGAAACTATTATCCTGTCCCAGA-GGCAC 53172 Query 112588 GTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTAT 112647 || | ||||| ||| | || | ||| | | | | ||||| |||||| | || || | Sbjct 53173 GTTACTCTAACATGCGTAACAGACCAGTCGCTGTTGGTGTGCAAGGTTTAGCCGACACCT 53232 Query 112648 TCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCA-ATGCGCGT--- 112703 || | | |||| | ||||| | | | | |||| | ||| || | | Sbjct 53233 TCTTCCAGATGCGCCTTCCGTTTGA--CAGTCCA---GAAGCACGTCAGTTGAACATTCA 53287 Query 112704 -ATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGA 112762 || || ||||| || || ||||| ||||| ||||| ||||| |||| || | || Sbjct 53288 AATCTTCGAGACTATTTACCACGCTGCTCTCGAGGCATCCTCGGAACTGGCCGAAGAGGA 53347 Query 112763 TGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT-CAATTTGATA 112821 ||| ||||||| | || |||||||||||| || || |||||| | || ||||| ||| Sbjct 53348 GGGTACATATGAGAGCTATGAGGGTTCTCCTGCATC-CAAGGGCTTATTACAATTCGATT 53406 Query 112822 TGTGGGAAGGTGAGA--CCAAGC-TTCACTACGACTGGGACGCTCTCAAGGAACGCATCA 112878 | ||| ||| ||| || | | || | || ||||| || | ||| || Sbjct 53407 TATGG---GGTAAGAAGCCTACCGATCTTTGGGATTGGGATTCTTTGAAGTCCAAGATTG 53463 Query 112879 AGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCAC 112938 |||| ||| | | ||| || ||| ||||||||||||||||||| || || | | Sbjct 53464 CCAAGAACGGTTTGAGAAACTCGCTCTTGGTGGCACCAATGCCAACAGCTTCTACTTCCC 53523 Query 112939 AAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAA 112998 | || |||| |||| || |||||||| |||| ||| |||||||||| | ||||||| Sbjct 53524 AGATTATGGGCTATAACGAGTGCTTTGAGCCCTTCACCTCGAACATCTACCAGAGAAGAG 53583 Query 112999 CCCTCGCGGGAGAGTTTGTGATTGTCAA--CAAGCATCTCGTGGATGACCTCAAAGAGAT 113056 ||||| || ||||| ||| ||||| | ||| | || ||| | || || Sbjct 53584 TTCTCGCAGGTGAGTTCCAGATCGTCAATCCTTACATGT--TGAGAGACTTTGTCGATAT 53641 Query 113057 TGGTCTCTGGTCCAAGGAT---ATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCA 113113 ||| ||||| || ||| |||||| | | || | | | ||||| || || Sbjct 53642 GGGTATCTGG---AATGATGCCATGAAGAACTTTATTATTCACGACAACGGTTCGATCCA 53698 Query 113114 AAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAA 113173 ||| | | |||||||| | || || ||| | ||||| || || ||||| || Sbjct 53699 GAATTTGCCAAACGTTCCAGATAAGATAAAAAAGCTCTACCGTACTGTCTGGGAGCTCCC 53758 Query 113174 GATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAG 113233 |||| | |||| || ||||| || || | ||| || | | |||| |||| || Sbjct 53759 ACAAAAGGCTATCATCGATATGGCAGCTGACAGAGGTGCCTACCTCGATC--AGTCGCAG 53816 Query 113234 T--ATGAATCTATTCATGGAAAG--TCCAACGATGTCCAAGCTCTCTTCTATGCACATGT 113289 | ||||| || || | || ||| || ||| || | |||| |||||| | | Sbjct 53817 TCGATGAA--CATCCACTTACAGGCTCCTACCATGGGTAAATTGACTTCGATGCACTTCT 53874 Query 113290 ACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 || | ||||||||||| || || || || ||||| ||| Sbjct 53875 ACGGCTGGAAGAAGGGGCTAAAGACTGGTATGTACTAC 53912 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/230 (68%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| ||||| ||||| ||| ||| | || ||||| || || || ||| || || Sbjct 997989 GGTACCAATGGAGAATCAAGTGGAATTGTGCCTATGCTGCGAGTCTTCAACAGTACCGCT 997930 Query 111963 CGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 | ||||| |||| | ||| | || || ||||| | |||||| || || Sbjct 997929 CAATATGTTGACCAGGGTGGTAATAAACGACCTGGTGCTATCTGTGCCTATCTAGAACCG 997870 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 ||||| |||||||||||||| ||| | || ||| ||||| ||| | || ||| | Sbjct 997869 TGGCATGCGGATATCATGGAATTCTTAGACTTGAAAAAGAACCACGGTAAGGAAGAGATG 997810 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAA 112129 || | | || || |||| ||||| ||||| |||||| | |||||||| Sbjct 997809 AGGGCCAGGGACCTATTCTATGCTCTTTGGATCCCAGATTTGTTCATGAA 997760 Score = 82.4 bits (90), Expect = 9e-11 Identities = 279/427 (65%), Gaps = 12/427 (3%) Strand=Plus/Minus Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 ||||| |||||| || || || || |||| || | || | |||||||||||| | Sbjct 996959 TGGCATTAATGCCGACTGCATCAACTTCACAGATTCTAGGATTCACTGAATGCTTTGAGC 996900 Query 112969 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 113028 | || | ||| | ||| | ||||| | | |||||| | | | || || Sbjct 996899 CAATAACCTCCAACGTGTATACGCGAAGAGTGTTATCTGGAGAGCATCAGGTGGTTAATC 996840 Query 113029 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 113088 | ||||||| ||||| | | |||| || | ||| | || || ||||||| | Sbjct 996839 ATTATCTCGTTGATGATTTGATTGAGAAAGGATTGTGGAACCGAGAAATCAAGGATCAGA 996780 Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148 | || |||| ||| || |||||| |||| | ||||||| | || ||| | Sbjct 996779 TAGTTGCAGCGAATGGATCGATTCAAGATATCTCGTCTATTCCACAATTCATGAAGGATA 996720 Query 113149 TGTACCGCACAGTTTGGGAAAT--CA-AGATGAAGGATGTCATTGACATGGCCGCAGATC 113205 |||| || ||||| ||||| || || ||| || | ||||||| ||||| |||||| Sbjct 996719 TGTATCGAACAGTATGGGAGATATCACAGAG--AGTAA-TCATTGATATGGCAGCAGATA 996663 Query 113206 GTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT--ATTCATGGAAA-GTCCAACGA 113262 | | || | |||||||||| |||||| ||||||| ||| | | | || | | Sbjct 996662 GAGCTCCATACATTGATCAATCGCAAAGTCTGAATCTTTATTTACGTACCTGTTCCA--- 996606 Query 113263 TGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 113322 |||| ||||| | ||||| | || |||||||||||| || || || || |||| Sbjct 996605 TGTCAAAGCTTACCAGCATGCATTTCTATGCTTGGAAGAAGGGACTTAAGACAGGTATGT 996546 Query 113323 ATTACCT 113329 |||| || Sbjct 996545 ATTATCT 996539 >seq23 Length=838141 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 102265 || ||| |||||||||| ||||| || |||| | || | |||||| |||||| ||||| | Sbjct 742617 GAAGGTGTCTTCTTCTCCGGTTCATT-TGCGGCCATCTTTTGGCTAAAGAAGAGAGGTTT 742675 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||||||||||| |||||| ||||| ||||||| | ||||| || Sbjct 742676 GATGCCAGGTCTTACCTTCTCGAACGAACTTATCTGCAGAGACGAAGG 742723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741810294720