Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq12 251 8e-62 >seq12 Length=1129233 Score = 251 bits (278), Expect = 8e-62 Identities = 1111/1742 (64%), Gaps = 39/1742 (2%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || |||||||| || || || || |||||| |||| | ||||| |||| | ||| Sbjct 53911 TAGTACATACCAGTCTTTAGCCCCTTCTTCCAGCCGTAGAAGTGCATCGAAGTCAATTTA 53852 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | || ||| || | | |||||||||||| |||||||||| | | ||| Sbjct 53851 CCCATGGTAGGAGCCTGTAAGTGGATGTTCATCGACTGCGACTGATCGAGGTAGGCACCT 53792 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 | ||||| ||||| ||||||||| |||||| | ||||||||||| ||| | Sbjct 53791 CTGTCAGCTGCCATATCGATGATAGCCTTTTGTGGGAGCTCCCAGACAGTACGGTAGAGC 53732 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 || || || | ||| |||| || | || || || || || | | | || Sbjct 53731 TTTTTTATCTTATCTGGAACGTTTGGCAAATTCTGGATCGAACCGTTGTCGTGAATAATA 53672 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAA-CAAGATGCTT 109712 | | |||||| | | ||||| ||| | | | || | ||| ||| ||| Sbjct 53671 AAGTTCTTCATGGCATCATTCCAGATACCCA---TATCGACAAAGTCTCTCAACATGTAA 53615 Query 109713 G--TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 | ||||| | || ||||| || || | || |||||||||| | ||| || Sbjct 53614 GGATTGACGATCTGGAACTCACCTGCGAGAACTCTTCTCTGGTAGATGTTCGAGGTGAAG 53555 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 || || || ||||| || | ||| | || || | ||| |||||||| ||||| || ||| Sbjct 53554 GGCTCAAAGCACTCGTTATAGCCCATAATCTGGGAAGTAGAAGCTGTTGGCATTGGTGCC 53495 Query 109831 ATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC--ACG-CATTGCGTCCCAA 109887 | | || ||||| | ||| ||| || | || || || | |||||| Sbjct 53494 ACCAAGAGCGAGTTTCTCAAACCGTTC---TTGGCAATCTTGGACTTCAAAGAATCCCAA 53438 Query 109888 TCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCA 109947 || || || | || || || ||| ||| | ||| ||| | || |||| Sbjct 53437 TCCCAAAGATCGGTAGGCTT---CTTACC---CCATAAATCGAATTGTAATAAGCCCTTG 53384 Query 109948 GCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAA 110007 | ||||||||||||| | ||||| || | ||||| | ||||||| || || || Sbjct 53383 GATGCAGGAGAACCCTCATAGCTCTCATATGTACCCTCCTCTTCGGCCAGTTCCGAGGAT 53324 Query 110008 GCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCT 110067 ||||| || || || || || |||||||| || || ||| |||| | || | ||| Sbjct 53323 GCCTCGAGAGCAGCGTGGTAAATAGTCTCGAAGATTTGAATGTTCAACTGACGTGCTTCT 53264 Query 110068 TCACAGTCGAAGGGAAGAC-CACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAG 110126 || ||| || ||||| | || ||| || || |||| ||| || ||||| | Sbjct 53263 GGACTGTCAAACGGAAGGCGCATCTGGAAGAAGGTG-TCGGCTAAACCTTGCACACCAAC 53205 Query 110127 ACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCG 110186 | | | || | | |||||||||| || || | || || ||| |||| | Sbjct 53204 AGCGACTGGTCTGTTACGCATGTTAGAGTAACGTGCCTCTGGGACAGGATAATAGTTTCT 53145 Query 110187 GTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTA 110246 ||| ||||| || || | ||| || | | || | || | ||| | || ||| | Sbjct 53144 GTCAATGACACGGTTCAAGTTCCGAGTAAGAACTTTGGCAATCTTATGCAACTTCTCGAA 53085 Query 110247 ATCGAACG--------TTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCA 110298 | | || |||||||| || |||| | ||||| || ||| || Sbjct 53084 GTTGTACCACGAGGTCTTTTCGTCAGATTC--GACAAAGGCCGGGAGGCAAAGAGAAGCC 53027 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 | || || ||| ||| |||||| | | ||| || | ||| || || ||||| Sbjct 53026 AAGTTACAGACACCAGTTTCGTCTGGTGCTGAGTACTCGACAATCTCACAGCATAAGTTC 52967 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 || ||| ||| ||||||||||| || || || ||| ||||||||||| ||| Sbjct 52966 GAGGACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAG 52907 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGC 110477 |||||| |||| ||||| ||||| ||||| | | | ||| | ||| | | || | Sbjct 52906 AGCATGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCTGA 52847 Query 110478 GGCGGGGACAGTTGCGT-TAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAA 110536 | | | || || ||| || || | || ||| |||||| ||||| ||| |||||| Sbjct 52846 GCCTTG-ACGGTA-CGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAA 52789 Query 110537 ATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAAT 110596 | || | ||||||||| |||||||| ||| || | | || | || || | ||| | Sbjct 52788 ACTCGTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATT 52729 Query 110597 TTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGT 110656 || || |||||| | ||||||||||| ||| |||||||| | || | ||| | | Sbjct 52728 GACCGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAAT 52669 Query 110657 CACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATAT 110716 ||||| ||| || || | ||| || || | | || | || || | ||| | Sbjct 52668 CACGGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGT 52609 Query 110717 CCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC----CTTACGACGACCCGCCTGG 110772 | | |||||||||||| | ||| || || |||| || ||| | ||| | ||| Sbjct 52608 CTGCGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTT-ACCTCCTTGG 52550 Query 110773 TTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGA 110832 | || || | || ||| ||||| || | | ||| |||||||| |||| || | Sbjct 52549 TCGACGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTA 52490 Query 110833 CCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATA 110892 || || ||||| || || | ||||||||| || ||| ||||||||||||||| Sbjct 52489 CCGTTGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATA 52430 Query 110893 CCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATC 110952 || || || ||| ||| ||||||||| | | ||| | || || || ||||| Sbjct 52429 CCGCCGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATA 52370 Query 110953 GAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCA 111012 ||||| |||| | |||| | |||||| ||||||||||| ||| | || || |||||| Sbjct 52369 GAATCGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCA 52310 Query 111013 TTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCG 111072 ||||| | || || | || || |||| || | |||||| ||| || || ||| Sbjct 52309 TTGAACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCG 52250 Query 111073 AGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGA 111132 | | || | ||| | ||| ||||| || | |||||||| ||| | || || ||| Sbjct 52249 ATGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGT 52190 Query 111133 GG 111134 || Sbjct 52189 GG 52188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975440472800