Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq12 304 2e-77 seq23 86.0 7e-12 >seq12 Length=1129233 Score = 304 bits (336), Expect = 2e-77 Identities = 950/1443 (66%), Gaps = 45/1443 (3%) Strand=Plus/Minus Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 ||||| ||| ||||| || ||||| ||||||| | |||||||||| ||| |||| Sbjct 53611 TTGACGATCTGGAACTCACCTGCGAGAACTCTTCTCTGGTAGATGTTCGAGGTGAAGGGC 53552 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 |||||||| || |||| |||| || || | || || ||||||||||||||||||| | Sbjct 53551 TCAAAGCACTCGTTATAGCCCATAATCTGGGAAGTAGAAGCTGTTGGCATTGGTGCCACC 53492 Query 106016 AAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC-----CTTGAGAACATCCCAGT 106070 || || ||| | | ||| || |||| || || ||| | | |||||| | Sbjct 53491 AAGAGCGAGTTTCTCAAACCGTT---CTTG--GCAATCTTGGACTTCAAAGAATCCCAAT 53437 Query 106071 CGTAGTTGAGCTTGGTTT-CACCTTCCCACATA--TCAAATTG-AAGCACCCCTTGGGAC 106126 | | || | ||| | ||| || |||| || ||||| || | ||||||| | Sbjct 53436 CCCAA---AGATCGGTAGGCTTCTTACCCCATAAATCGAATTGTAATAAGCCCTTGG-AT 53381 Query 106127 GTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCC 106186 | |||||||||||| | ||||||| | ||| | |||| |||| ||| || ||| Sbjct 53380 GCAGGAGAACCCTCATAGCTCTCATATGTACCCTCCTCTTCGGCCAGTTCCGAGGATGCC 53321 Query 106187 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT-- 106244 || || | ||||| || || || || ||||| || |||| || ||||| Sbjct 53320 TCGAGAGCAGCGTGGTAAATAGTCTCGAAGATTTGAATGTTCAACTGACGTGCTTCTGGA 53261 Query 106245 CTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 ||| ||||| | | || ||| | | || || || | |||||| ||||| | | Sbjct 53260 CTG--TCAAACG-GAAGGCGCATCTGGAAGAAGGTGTCGGCTAAACCTTGCACACCAACA 53204 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCT 106362 | | ||||||| ||||| ||||| | || || ||| || |||||| | ||||| Sbjct 53203 GCGACTGGTCTGTTACGCATGTTAGAGTAACGTGCC-TCTGGGACAGGATAATAGTTTCT 53145 Query 106363 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 106422 ||||||||| ||||| | || |||| || || | || | ||| | || || | Sbjct 53144 GTCAATGACACGGTTCAAGTTCCGAGTAAGAACTTTGGCAATCTTATGCAACTTCTCGAA 53085 Query 106423 ATCAAAAGTGCGAG-TCTCTTC-----ATT-GACATACTTTGGAAGGGCGATTGATGCCA 106475 | | |||| ||| ||| ||| |||| | || ||| | || |||| Sbjct 53084 GTTGTACCA-CGAGGTCTTTTCGTCAGATTCGACAAAGGCCGGGAGGCAAAGAGAAGCCA 53026 Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGG 106535 | || || ||| | || || || ||| |||||| | ||| || || ||||| | Sbjct 53025 AGTTACAGACACCAGTTTCGTCTGGTGCTGAGTACTCGACAATCTCACAGCATAAGTTCG 52966 Query 106536 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGA 106595 | ||| || || ||||| |||| ||||||||||||| |||| || ||||||||||||| Sbjct 52965 AGGACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGA 52906 Query 106596 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCG 106654 ||||| | || || || || || ||||| | | | ||| | ||||| | || | | Sbjct 52905 GCATGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCTGAG 52846 Query 106655 GCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAA 106713 || | || | ||| || ||||||||| |||||| ||||| | ||| ||||| Sbjct 52845 CCTTG-ACGGTA-CGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAA 52788 Query 106714 CTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTG 106773 ||| || || | |||| || || || || || | | ||| | || |||| |||||| Sbjct 52787 CTCGTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTG 52728 Query 106774 ACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATC 106833 ||| || |||||| ||||||||||| | ||| |||||||| |||| || || | ||| Sbjct 52727 ACCGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATC 52668 Query 106834 TC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 106892 | ||| || || || | ||| || || || | |||| ||| || | ||| | Sbjct 52667 ACGGGCACGGA-TTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGT 52609 Query 106893 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGA 106948 | ||||||||||| || | ||| ||||| || | || |||| | || |||| Sbjct 52608 CTGCGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTG-TTACCTCCTTGG 52550 Query 106949 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 107008 | || || | || ||| ||| || || |||| ||||||||||||||||| ||| | Sbjct 52549 TCGACGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTA 52490 Query 107009 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 107068 || || || || || ||| | |||| | || | || || ||||| |||||| Sbjct 52489 CCGTTGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATA 52430 Query 107069 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 107128 || || || ||| || || |||||||| | | ||| | ||||| || | || Sbjct 52429 CCGCCGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATA 52370 Query 107129 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 107188 || || ||||| | || | | ||||| ||||||||||| ||| ||||| ||| Sbjct 52369 GAATCGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCA 52310 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCC 107248 ||||| | ||||| | ||||| |||| || | |||||| || || ||||| Sbjct 52309 TTGAACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCG 52250 Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGG 107308 | ||| || || || || || || |||| ||| || | ||||| || | ||| Sbjct 52249 ATGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGT 52190 Query 107309 GGT 107311 ||| Sbjct 52189 GGT 52187 >seq23 Length=838141 Score = 86.0 bits (94), Expect = 7e-12 Identities = 258/389 (66%), Gaps = 22/389 (6%) Strand=Plus/Minus Query 169184 ACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCG 169243 ||| ||||| || |||||||| | ||| ||| | ||||||||||||| | ||||| | Sbjct 495796 ACCTTTGATATGCGAACCATCGTGATCCTGATCGGCCATAATCATAAGATGTCCATATCT 495737 Query 169244 AAG----TTCAGAA---ACATCTTGGTAGTCTTTTCCT-TGTTGAAGACCCAAGATCTTC 169295 || ||||| || || | ||| || ||| | ||||| ||||||| |||| | Sbjct 495736 TAGACTCTTCAGGTTTGAC-TCCTCGTAC-CTCTTCTTGTGTTGTAGACCCATAATCTGC 495679 Query 169296 TTGAGATCGTTGAACTCTTGGTT-----TGATGTGAGCTGTGCCACTGAAGCGTCGCGGA 169350 || | | | | | ||||||||| | || ||| ||| ||||| || || || | Sbjct 495678 TTAATAGCCTGAATCTCTTGGTTCTTCATAATCTGATCTG---CACTG--GCTTCACGCA 495624 Query 169351 CATTCTTACA-CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAG 169409 | ||| ||| ||| || || |||||| | || |||| || | ||| ||||| | Sbjct 495623 CGTTCA-ACAGCTTACCTCGTAGAGGATAACAACCGTAGTAATTTCTTCCTACGACCGCC 495565 Query 169410 AGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTT 169469 | ||| || ||||| | || || ||||||||||| || | || | || ||||| Sbjct 495564 AAACCTGCCACCGCCAAAGTCAAGGCAGAATCACCCTCAGTAAGGATCAACGTGCACTTG 495505 Query 169470 CCAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTG 169529 | || | ||| || || |||| || || ||||| || ||| || |||||| | Sbjct 495504 TAACCTTCCCGCGTTCCTGCTCTGTTAGCATCCTCCAATTTTGGATATCCGGTAATTCTA 495445 Query 169530 GACTTGCGAGCACCATCGGTTTTCTTGAG 169558 ||| || ||||| |||||||||| Sbjct 495444 TTCTTTCGGCTTCCATCCATTTTCTTGAG 495416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980239518240