Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq23 228 9e-55 seq12 176 5e-39 >seq23 Length=838141 Score = 228 bits (252), Expect = 9e-55 Identities = 612/917 (67%), Gaps = 19/917 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || || || |||| ||| || ||||| ||||| || || ||||| | ||||| || | Sbjct 743035 TTCTGGTAATCGGAAACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTT 742976 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||| ||||||||| | | || || | ||| | | | |||| | || Sbjct 742975 TCCATGAAATCGAATGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAAC 742916 Query 18790 AGTCTATCCGCTACA-AATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | ||| || || ||| || | || |||| | |||||||||||||||||| || | | Sbjct 742915 AATCTGTCGGC-ACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAG 742857 Query 18849 TTTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 |||||||| ||||||| | ||||| |||| ||| |||| || || || | || | Sbjct 742856 AGAAACAGGTAATGCATCTCTCCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCATGA 742798 Query 18908 --TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 | | | | | |||| ||||||||||| | | ||| || | | || || Sbjct 742797 TCTTGGT-GATGATTTTCTT-ATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGC 742740 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||||| ||||| || |||||||| | || | ||| || || || || | ||| || Sbjct 742739 GAAATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGG 742680 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||||| ||||| || |||| ||| || || | |||||||| || || ||||| | ||| Sbjct 742679 CATCAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACC 742620 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| | || || || || || | ||||||| | || ||||| || | | ||||| Sbjct 742619 TTCGATAGCGGCGAAGGCGACCAATCTTTCTGCGTATAGTGCATCCTTGCTGTTGATCCA 742560 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| ||||| | || | || || || || || | |||||||| Sbjct 742559 ACGAAGAGCCCATAATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAA 742500 Query 19206 ATA--CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 || || | | | ||| ||||| | || || | || | ||| | | || | || Sbjct 742499 GTAATCAGATTC-CTTCT-TATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCA 742442 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 ||||| || || || | ||||| |||||||| || || || |||| | ||| Sbjct 742441 GAATGGATGTTCTCCACCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGA 742382 Query 19324 AC-TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 || ||| | || | ||| | |||||| |||| ||| || |||||| || ||||| Sbjct 742381 ACGTTCTGTGTGAAGT-TTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAA 742323 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TG-TATTCCAAT 19438 || || || ||| || || |||| | |||||| || |||| || | ||||| | Sbjct 742322 GAAGGCCAACACACGTGCGATGAAATATCTTTCAT-TGGCATTAAGCTTGTTCTTCCAGT 742264 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 || || ||| || || | ||| | ||||| | ||||| ||||| || || || || | Sbjct 742263 CAGGAACATCCTTTGAGAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCT 742204 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTT 19558 | ||||| | ||| |||||| ||||| ||||| || || |||||||||| || || | Sbjct 742203 TGTACATCTGCCAAATATCATCGTATTGGATAGGGAACATGACAAATCTATGCTTGTTCT 742144 Query 19559 CTTTAAGAATAGGTTCC 19575 |||| | | ||||||| Sbjct 742143 CTTTCAACAAAGGTTCC 742127 >seq12 Length=1129233 Score = 176 bits (194), Expect = 5e-39 Identities = 397/596 (67%), Gaps = 8/596 (1%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| || | || || ||||| || ||| || ||||| | | | | ||| || | Sbjct 52707 TCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCACGGGCACGGATTTCCTCCT 52648 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | ||| |||| || | | |||| || || | || || || ||||||||||| | || Sbjct 52647 TACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTGCGTGCCATGGTTCCATAT 52588 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | | ||| || ||||||||| ||| ||||||||||| || | ||||||||||| |||| Sbjct 52587 ACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGACGTATCTGGCAGTGTTGT 52528 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | |||| | | |||||| | |||||||||||| |||| ||||| || | || ||| Sbjct 52527 TGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGTTGGTACCGGCGATGTAAG 52468 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 ||| | || | | || ||| ||||| ||||| || || | || || || | Sbjct 52467 AGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGCCGGCGGTCTTCGAAATCA 52408 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 |||||| ||| | ||||| || || ||||| ||| ||| || |||| | | Sbjct 52407 AGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAATCGTCCTTCATCGCAACCA 52348 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 ||| || |||||| |||||||| || || | ||| || || |||||||| || | Sbjct 52347 AAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGAACAAAGTTGGAGAAGCGT 52288 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCT----ATATCC 48686 | | || | ||| || | | ||||| || || || || ||| ||||| Sbjct 52287 GGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCGAT----GACTCTTGGGATATCG 52232 Query 48687 CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 ||| || || | | || | ||| | || || ||| ||||| || ||| ||| Sbjct 52231 TCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTGGTCTCTCTGCAACTTTA 52172 Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||| ||| |||| ||||| || ||||| ||||| |||||||| |||||||| Sbjct 52171 CCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAACCAAAGTAGTTGTA 52116 Score = 149 bits (164), Expect = 7e-31 Identities = 235/329 (71%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATC 48250 ||||| |||| || | |||| || | |||||| ||||||||||| ||| |||| || Sbjct 997742 TCATCGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGAGC-ATAGAATAGGTC 997800 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT-AAGTTCAAGAAAGTCCATTATAT 48309 ||| | || | ||||| || || ||| |||| |||| ||||| ||||| |||| Sbjct 997801 CCTGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAGTCTAAGAAT-TCCATGATAT 997859 Query 48310 CAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGAT 48369 | |||||||| ||||||| ||| || |||| |||||||||||||| || || | Sbjct 997860 CCGCATGCCACGGTTCTAGATAGGCACAGATAGCACCAGGTCGTTTATTACCACCCTGGT 997919 Query 48370 CTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATAC 48429 | | |||| || ||| |||| | |||| | ||| || ||||| ||| ||||| | Sbjct 997920 CAACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAATTCCACTTGATTCTC 997979 Query 48430 CATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC-TAATTGAAATACCTATA 48488 ||||||| ||||| ||||| |||| || |||| ||| | ||| || ||||| || Sbjct 997980 CATTGGTACCCGATATATAGGTTCCTGCTGCCCTTACATTGCTTAAATG-CATACCAATT 998038 Query 48489 CCACCTGCCATTTTAGATATTAGAGCACA 48517 ||||| || ||| ||||| | |||||| Sbjct 998039 CCACCGGCAGCTTTCGATATCATAGCACA 998067 Score = 116 bits (128), Expect = 4e-21 Identities = 305/454 (67%), Gaps = 15/454 (3%) Strand=Plus/Plus Query 47018 TAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAA 47077 || |||||||||||| ||||| | || |||| ||||||||||||| || || | Sbjct 996538 TAGATAATACATACCTGTCTTAAGTCCCTTCTTCCAAGCATAGAAATGCATGCTGGTAAG 996597 Query 47078 TTTAGA-AT--AACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAA 47134 || || || ||| |||| | ||||| || ||| ||| ||| |||||||| | Sbjct 996598 CTTTGACATGGAAC-AGGTACGTAAATA--AAGATTCAGACTTTGCGATTGATCAATGTA 996654 Query 47135 TGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTT 47194 || | ||||||| ||||||||||| | || || || |||| |||||||||||||||| Sbjct 996655 TGGAGCTCTATCTGCTGCCATATCAATGATTACTCTCTGTGATATCTCCCATACTGTTCG 996714 Query 47195 ATAAATTTGTTTAATGTCTTCTGG--GAGATTAG-TATTTTGAATAGATCC-TCCgtttt 47250 ||| || | || ||| || ||| ||| || ||| |||||| ||||| | || | Sbjct 996715 ATACATATCCTTCATGAATTGTGGAATAGACGAGATATCTTGAATCGATCCATTCG-CTG 996773 Query 47251 ctataattttgttttttaat--tcatttgaccaaagttttcgttcagttaatgtttttaa 47308 | | || | | || | | || || ||| |||| ||| | || | | Sbjct 996774 CAACTATCTGATCCTTGATTTCTCGGTTCCACAATCCTTTC--TCAATCAAATCATCAAC 996831 Query 47309 AAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACT 47368 |||| | ||||||| | ||| |||||||||| ||||| || |||| | || Sbjct 996832 GAGATAATGATTAACCACCTGATGCTCTCCAGATAACACTCTTCGCGTATACACGTTGGA 996891 Query 47369 TGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 || ||| || | ||||| | ||| | ||| || | ||||||||| || ||||| Sbjct 996892 GGTTATTGGCTCAAAGCATTCAGTGAATCCTAGAATCTGTGAAGTTGATGCAGTCGGCAT 996951 Query 47429 GGATGCAACTAATAAGCTATTTCTTACTCCATAT 47462 |||| |||||||| ||| |||| ||||||| Sbjct 996952 TAATGCCACTAATAATGAATTCCTTAATCCATAT 996985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108265996640