Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq12 129 3e-25 >seq12 Length=1129233 Score = 129 bits (142), Expect = 3e-25 Identities = 309/465 (66%), Gaps = 2/465 (0%) Strand=Plus/Minus Query 25898 AATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATT 25957 |||| | ||| | | | || |||||||| || ||| || || || |||||||| | Sbjct 52741 AATAGAGTCCATTGACCGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGG 52682 Query 25958 GCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAG 26017 || || ||||| | || | ||||| || || || ||||||||| | | ||| | | Sbjct 52681 GCTGGGAACAAATCACGGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATG 52622 Query 26018 AAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTT 26077 ||||| || || |||| |||||||||||| | ||| | |||| |||| |||||| Sbjct 52621 AAATCGAAGATGTCTGCGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTG 52562 Query 26078 CCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAAT 26137 || ||||| || |||||||| ||||| | |||||||| | |||||||| |||| Sbjct 52561 TTACCTCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAA-TAAT 52503 Query 26138 -CCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGC 26196 ||| |||| ||||| || | || | || || || | | || | |||| Sbjct 52502 ACCATTTGAGGTACCGTTGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAAT 52443 Query 26197 ATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAA 26256 ||| ||||| || || || || || ||||| ||||| ||| | |||||| | Sbjct 52442 ATGCATACCAATACCGCCGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTA 52383 Query 26257 AATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATG 26316 || |||| || ||| | ||||| | | ||||| || ||||| | |||| ||| Sbjct 52382 GATGCCTTCAATAGAATCGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATG 52323 Query 26317 AGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATA 26361 | || || | ||| || || || || | ||| || || |||| Sbjct 52322 TGGGGTACCCGCATTGAACAAAGTTGGAGAAGCGTGGGTGAAATA 52278 Score = 84.2 bits (92), Expect = 1e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 25019 TCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTA 25078 |||||||| || ||||||| | | | ||| || || | ||| ||||| |||||| | Sbjct 996857 TCTCCAGATAACACTCTTCGCGTATACACGTTGGAGGTTATTGGCTCAAAGCATTCAGTG 996916 Query 25079 TTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTC 25138 ||||| || || ||||| ||||| || ||||||||||| | ||||| ||||| || Sbjct 996917 AATCCTAGAATCTGTGAAGTTGATGCAGTCGGCATTAATGCCACTAATAATGAATTCCTT 996976 Query 25139 AAACCATAT 25147 || |||||| Sbjct 996977 AATCCATAT 996985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039765621700