Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq12 284 1e-71 seq3 82.4 9e-11 >seq12 Length=1129233 Score = 284 bits (314), Expect = 1e-71 Identities = 1096/1690 (65%), Gaps = 55/1690 (3%) Strand=Plus/Plus Query 75269 GTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTC 75328 ||| | ||||| || || |||||| | || |||| ||||| | ||||| | Sbjct 52245 GTCATCGAGACCTATAACCTAATGTCCGAGCGTTATTTCACCCACGCTTCTCCAACTTTG 52304 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 |||||||| ||||| ||| ||||||||||| ||||| | | || | ||||| Sbjct 52305 TTCAATGCGGGTACCCCACATCCGCAGATGTCTTCCTGCTTTTTGGTTGCGATGAAGGAC 52364 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 || || || | || ||||| | ||| | | |||||||| || || ||| || Sbjct 52365 GATTCTATTGAAGGCATCTACGATACTTTGAAAGAGTGTGCCTTGATTTCGAAGACCGCC 52424 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || |||||||| ||||| || || | || | |||| | ||| || || || Sbjct 52425 GGCGGTATTGGTATGCATATTCACAACGTTCGTGCCACTGGCTCTTACATCGCCGGTACC 52484 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| ||| ||||||||||||||||| |||| || || ||| ||| || | || Sbjct 52485 AACGGTACCTCAAATGGTATTATTCCAATGATTCGTGTTTTCAACAACACTGCCAGATAC 52544 Query 75569 GTAAATCAAGCGGGGCGTCGCAAGG---GGT-CCATCGCGGTCTACTTGGAACCATGGCA 75624 || | |||| | || | ||| ||| |||| || || || ||||||||||||| Sbjct 52545 GTCGACCAAG-GAGGTAACAAAAGACCAGGTGCCATTGCAGTGTATATGGAACCATGGCA 52603 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 || || ||| | || ||| |||| | || || || ||| | || || || ||| Sbjct 52604 CGCAGACATCTTCGATTTCATTGATATCAGAAAGAATCATGGTAAGGAGGAAA-TCCGTG 52662 Query 75685 TA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 | ||| | || || |||| |||||||| ||| | ||||||||||| |||||| || Sbjct 52663 CCCGTGATTTGTTCCCAGCCCTATGGATTCCCGACTTGTTCATGAAGCGTGTTGAGCAGA 52722 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 ||||||||| |||| || | ||| | | || || || || || |||| | || | Sbjct 52723 ACGGTCAATGGACTCTATTTTCGCCATCCGAAGCTCCGGGCCTTTCTGACGTGTACGGAG 52782 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 | |||||||| ||| | ||||| || || |||||| | | | ||| |||| Sbjct 52783 ACGAGTTTGAGGCCTTATACACGCGTTACGAGAGGGAGGGACGCGGTA----GAC-GTAC 52837 Query 75864 C----AGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 | || | | || ||| ||| | ||| | || | ||||| || || || || || Sbjct 52838 CGTCAAGGCTCAGAAGTTGTGGTACCAGATTTTGGAAGCCCAGACTGAAACCGGTACTCC 52897 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 || ||||| ||||||||||| ||||||| |||||||||||| |||| ||||| || || Sbjct 52898 ATTCATGCTCTACAAGGATGCATGTAACAGAAAGAGTAACCAACAGAACTTGGGTACCAT 52957 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 |||| ||| || | ||| || ||| | |||||| ||| || || || | ||| Sbjct 52958 CAAGTCCTCGAACTTATGCTGTGAGATTGTCGAGTACTCAGCACCAGACGAAACTGGTGT 53017 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC-AAT-----GAAGAGA-CTCGCA 76091 || || ||||| || | ||| || | |||| ||| ||| ||| |||| Sbjct 53018 CTGTAACTTGGCTTCTCTTTGCCTCCCGGCCTTTGTCGAATCTGACGAAAAGACCTCG-T 53076 Query 76092 CTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAG 76151 | | | || || | ||| | || | || || |||| || | ||||| | Sbjct 53077 GGTACAACTTCGAGAAGTTGCATAAGATTGCCAAAGTTCTTACTCGGAACTTGAACCGTG 53136 Query 76152 TCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 ||||||||||||| | |||||| || ||| || || | ||||| ||||| ||||| Sbjct 53137 TCATTGACAGAAACTATTATCCTGTCCCAGA-GGCACGTTACTCTAACATGCGTAACAGA 53195 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATT 76269 || | | | | ||||| |||||| | || || || | | ||| || | | || Sbjct 53196 CCAGTCGCTGTTGGTGTGCAAGGTTTAGCCGACACCTTCTTCCAGATGCGCCTTC-CGTT 53254 Query 76270 TGATTCAG--ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCA 76327 ||| ||| ||||| || |||| || ||||| || || || || ||||| Sbjct 53255 TGA--CAGTCCAGAAGCACGTCAGTTGAACATTCAAATCTTCGAGACTATTTACCACGCT 53312 Query 76328 TCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGT 76387 | || ||||| | ||| |||| |||| | ||| | ||||||| | ||||||| Sbjct 53313 GCTCTCGAGGCATCCTCGGAACTGGCCGAAGAGGAGGGTACATATGAGAGCTATGAGGGT 53372 Query 76388 TCTCCCGCGTCCCAAGGGGTGCTT-CAGTTTGA--TATGTGGGAAGGTG-AAACCAAGCT 76443 ||||| || | ||||||| | || || || || |||| || ||| | ||| | || Sbjct 53373 TCTCCTGCAT-CCAAGGGCTTATTACAATTCGATTTATGGGGTAAGAAGCCTACCGATCT 53431 Query 76444 CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 76503 | || |||||| | | ||| || |||| ||| | | ||| || Sbjct 53432 ---TTGGGATTGGGATTCTTTGAAGTCCAAGATTGCCAAGAACGGTTTGAGAAACTCGCT 53488 Query 76504 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 76563 ||| ||||||||||||||||||| || || | || || |||| |||| || ||||| Sbjct 53489 CTTGGTGGCACCAATGCCAACAGCTTCTACTTCCCAGATTATGGGCTATAACGAGTGCTT 53548 Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623 ||| || | ||| | |||||||||| ||||||| |||||||||||||| || || Sbjct 53549 TGAGCCCTTCACCTCGAACATCTACCAGAGAAGAGTTCTCGCAGGTGAGTTCCAGATCGT 53608 Query 76624 CAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGAT---ATGAA 76680 ||| || | | | ||| | | || ||| ||||| || ||| ||||| Sbjct 53609 CAATCCTTACATGTTGAGAGACTTTGTCGATATGGGTATCTGG---AATGATGCCATGAA 53665 Query 76681 GGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATAT 76740 | | | || | | | ||||| || || ||| | || | | |||||| | || Sbjct 53666 GAACTTTATTATTCACGACAACGGTTCGATCCAGAATTTGCCAAACGTTCCAGATAAGAT 53725 Query 76741 CAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGC 76800 || || |||||||| || || ||||| || || | | |||| || ||||| || Sbjct 53726 AAAAAAGCTCTACCGTACTGTCTGGGAGCTCCCACAAAAGGCTATCATCGATATGGCAGC 53785 Query 76801 AGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAG--TC 76856 || | ||| || | | |||| |||| ||| ||||| || || | || || Sbjct 53786 TGACAGAGGTGCCTACCTCGATC--AGTCGCAGTCGATGAA--CATCCACTTACAGGCTC 53841 Query 76857 CAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCG 76916 | || ||| || | |||| ||||| | |||| ||||| ||||||| || || | Sbjct 53842 CTACCATGGGTAAATTGACTTCGATGCACTTCTACGGCTGGAAGAAGGGGCTAAAGACTG 53901 Query 76917 GAATGTACTA 76926 | |||||||| Sbjct 53902 GTATGTACTA 53911 >seq3 Length=302914 Score = 82.4 bits (90), Expect = 9e-11 Identities = 196/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 175207 GACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATAT 175266 |||| || ||||| || || ||| ||||| | || |||||||| || || |||||| Sbjct 63728 GACGAGGCTAAAGAAGAGATTATGGAGTTTGTGAACTTCCTCAAGCATCCGGAAAGATAT 63787 Query 175267 TTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGA 175326 | ||||| ||||| || |||| || ||||| ||| || ||||| || Sbjct 63788 GAGCGTTTGGGTGCAAAGATTCCAAGAGGTGCAATTCTCTGCGGTCCTCCTGGTACCGGT 63847 Query 175327 AAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC-ATCCAGTGCTC 175385 |||||| | | || || | || || ||| | || |||||| || | ||| || Sbjct 63848 AAGACCTTGTTGGCTAAGGCTACTGCTGGAGAAGCCGCAGTTCCATTCTATTCTGTG-TC 63906 Query 175386 TGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTT 175445 | | | || || || |||||||||||||| ||||| |||||||| || | || Sbjct 63907 CGGTTCGGAGTTCGTTGAAATGTTTGTTGGTGTCGGTGCTTCCAGGGTTCGTGACTTGTT 63966 Query 175446 TGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 ||| |||| | || ||| || | ||||| ||| | ||||| |||||||| Sbjct 63967 CAAAACCGCCAGAGAGAATGCTCCTTCGATTGTGTTCGTCGATGAAATTGATGC 64020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569033258880