Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq45 145 1e-29
seq15 145 1e-29
seq1 114 2e-20
>seq45
Length=579175
Score = 145 bits (160), Expect = 1e-29
Identities = 172/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||||||||||| || |||| |||||||| | || || ||| || ||||||
Sbjct 354880 ATACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCG 354939
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || ||||| || || ||||| || || ||||| || |||||||| ||||| ||
Sbjct 354940 GACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGT 354999
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| || |||||||| || || || | ||| ||| ||||| ||||||||
Sbjct 355000 GGGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTGTCAATGGTATCAGAAGACTCG 355059
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| | || || || ||||| || | || || || || |||||||||||
Sbjct 355060 ACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 355112
>seq15
Length=115448
Score = 145 bits (160), Expect = 1e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||||||||||| | |||| || | |||| ||| || ||||| |||||
Sbjct 246 ATACCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 187
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | |||||| ||| ||||| || || |||||||| || |||||||| |||||||||
Sbjct 186 GAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGA 127
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||||||||| || || ||| | ||| || ||||| ||||||||
Sbjct 126 GGAATACCTTCTTTATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCG 67
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| | || || || ||||| || | || || || || || |||||
Sbjct 66 ACTTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17
Score = 136 bits (150), Expect = 7e-27
Identities = 171/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185
|||| |||||||| ||||| | | |||| || | |||| ||| || ||||| |
Sbjct 479 TTTACATACCACCCCTCAACCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGT 420
Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245
|||| || | |||||| ||| ||||| || || |||||||| || |||||||| ||||
Sbjct 419 AGTCAGAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGAT 360
Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305
||||||| || |||||||||||||| || || ||| | || || || || ||||
Sbjct 359 CAGGAGGAATACCTTCTTTATCTTGGATCTTTTGTTTCACGTTATCGATCGTGTCTGAAG 300
Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| || ||||| | || || ||||| ||||||| || || || || || |||||
Sbjct 299 ATTCGACTTCCAAGGTGATGGTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245
>seq1
Length=1746572
Score = 114 bits (126), Expect = 2e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||||||||||| | || | ||||| || | || || || || ||||| ||
Sbjct 813831 ACCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGA 813890
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
|| ||||| ||| || || || || || ||||| || |||||||| |||||||| ||
Sbjct 813891 CAATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGG 813950
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
||||| || || ||||| || || || | ||| |||||| || |||||||||||
Sbjct 813951 AATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAAC 814010
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| | || || || ||||| || | || || || || |||||||| ||
Sbjct 814011 CTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATT 814061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899653545328320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |