Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq23 192 9e-44
seq15 145 1e-29
>seq23
Length=838141
Score = 192 bits (212), Expect = 9e-44
Identities = 590/904 (65%), Gaps = 26/904 (3%)
Strand=Plus/Minus
Query 17885 TTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTA 17944
|| |||||||| || |||||||| ||||||| || | ||| ||||| ||||||||
Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955
Query 17945 GTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACA-AATTC 18003
|| | || || ||| || || | ||| ||||| || || ||| || ||
Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGC-ACAGAAGTC 742896
Query 18004 GACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAAT 18063
|||||||| |||||| ||| ||||||||||| | || | ||||| ||||| |
Sbjct 742895 AACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTCT 742836
Query 18064 A-ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTG 18122
| ||| ||||| || || || |||| || | || || || | | ||||||
Sbjct 742835 CCAGAAAGTCTTT-TCAATATCCACAGCTTCAGTCATGATCTTGGTGAT----GATTTTC 742781
Query 18123 GCAATTTATTAATTATGTGATTATAAT------ATAATAAACACGCAAAATCAGTGTGTA 18176
|||||| ||| || ||| |||||| || || ||||| || ||||
Sbjct 742780 -----TTATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTA 742726
Query 18177 AACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttt 18236
||||||| |||||| | || | |||||| || || | || ||||| | |||||| |
Sbjct 742725 AACCTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCT 742666
Query 18237 tttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGA 18296
| ||||||||||| || | || || || || ||||| | ||| || | ||||
Sbjct 742665 TCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGA 742606
Query 18297 ACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGCTCAGTATCCATTTTTGTGCCCAT 18355
| || | |||||||| || | | || || ||||| ||||| | ||||||
Sbjct 742605 AGGCGACCAATCTTTCTGCGTATAGTGCATCC-TTGCTGTTGATCCAACGAAGAGCCCAT 742547
Query 18356 TCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCT 18415
| | | || || ||| | || || |||||||| || | ||| |||
Sbjct 742546 AATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCC 742487
Query 18416 TTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCC 18475
|| |||| | | || || || | || | |||||| | |||||||| ||| | |||
Sbjct 742486 TTCTTATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCC 742427
Query 18476 ATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCT-CGCTATAAAA 18534
| ||||| || | || || | |||||||| || |||| | | | | ||
Sbjct 742426 ACCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAG 742367
Query 18535 TCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATA 18594
| ||| | ||||||||||| ||| ||||| |||| | || || || ||||| |||
Sbjct 742366 T-TTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACG 742308
Query 18595 TTTAATGAAATGTTTTTCATTATCCTTGAGATTG---TTCCATTCATCTATATCTTTTGA 18651
| ||||||| | ||||||| | || || ||| ||||| ||| | ||| |||||
Sbjct 742307 TGCGATGAAATATCTTTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGA 742248
Query 18652 TAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAAT 18711
||||| | ||||||| ||||| ||||||| ||| |||| |||||||| | ||||
Sbjct 742247 GAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAAT 742188
Query 18712 ATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAATTTTTTATTAACATAGGTTC 18771
||| || | ||| ||||| || | | | ||| | | || | | | |||| ||||||
Sbjct 742187 ATCATCGTATTGGATAGGGAACATGACAAATCTATGCTTGTTCTCTTTCAACAAAGGTTC 742128
Query 18772 TTCC 18775
|||
Sbjct 742127 CTCC 742124
>seq15
Length=115448
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || ||||||||||| || || || || || |||||||| ||||
Sbjct 17 ATGCAGATTTTCGTCAAGACATTGACTGGTAAGACCATCACCTTGGAAGTCGAGTCTTCT 76
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || || |||||| | || || |||||||||||||| || ||||| || ||
Sbjct 77 GATACGATCGATAATGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 136
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||| | ||||||||||||| | |||||| ||||| | || || || |||
Sbjct 137 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 196
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| | || ||||| || || || ||||| ||||| |||
Sbjct 197 ATCCAGAAGGAGTCTACTCTTCACTTGGTTTTGAGATTGAGAGGTGGT 244
Score = 132 bits (146), Expect = 7e-26
Identities = 171/235 (73%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || ||||| || || ||||| || || || ||||||||| |||
Sbjct 245 ATGCAGATTTTCGTCAAGACATTAACAGGCAAAACCATCACCTTGGAAGTCGAATCTTCA 304
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||||||| | || || |||||||||||||| || ||||| || ||
Sbjct 305 GACACGATCGATAACGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 364
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||| | ||||||||||||| | |||||| ||||| | || || || |||
Sbjct 365 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 424
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAA 156055
|| || ||| | || ||||| || || || || || || || || ||||||
Sbjct 425 ATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGGTTGAGGGGTGGTATGTAAA 479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871304721600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |