Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq23 192 9e-44 seq15 145 1e-29 >seq23 Length=838141 Score = 192 bits (212), Expect = 9e-44 Identities = 590/904 (65%), Gaps = 26/904 (3%) Strand=Plus/Minus Query 17885 TTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTA 17944 || |||||||| || |||||||| ||||||| || | ||| ||||| |||||||| Sbjct 743014 TTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTT 742955 Query 17945 GTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACA-AATTC 18003 || | || || ||| || || | ||| ||||| || || ||| || || Sbjct 742954 GTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGC-ACAGAAGTC 742896 Query 18004 GACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAAT 18063 |||||||| |||||| ||| ||||||||||| | || | ||||| ||||| | Sbjct 742895 AACATATTGATACATCATATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTCT 742836 Query 18064 A-ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTG 18122 | ||| ||||| || || || |||| || | || || || | | |||||| Sbjct 742835 CCAGAAAGTCTTT-TCAATATCCACAGCTTCAGTCATGATCTTGGTGAT----GATTTTC 742781 Query 18123 GCAATTTATTAATTATGTGATTATAAT------ATAATAAACACGCAAAATCAGTGTGTA 18176 |||||| ||| || ||| |||||| || || ||||| || |||| Sbjct 742780 -----TTATTAGGAGGGTGTTTCAAATGAGAGAATAATAGGCAGGCGAAATCGGTATGTA 742726 Query 18177 AACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttt 18236 ||||||| |||||| | || | |||||| || || | || ||||| | |||||| | Sbjct 742725 AACCTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCT 742666 Query 18237 tttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGA 18296 | ||||||||||| || | || || || || ||||| | ||| || | |||| Sbjct 742665 TCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGACACCTTCGATAGCGGCGA 742606 Query 18297 ACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGCTCAGTATCCATTTTTGTGCCCAT 18355 | || | |||||||| || | | || || ||||| ||||| | |||||| Sbjct 742605 AGGCGACCAATCTTTCTGCGTATAGTGCATCC-TTGCTGTTGATCCAACGAAGAGCCCAT 742547 Query 18356 TCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCT 18415 | | | || || ||| | || || |||||||| || | ||| ||| Sbjct 742546 AATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTAAATAAGTAATCAGATTCC 742487 Query 18416 TTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCC 18475 || |||| | | || || || | || | |||||| | |||||||| ||| | ||| Sbjct 742486 TTCTTATCTGTCACGTAGGTTTCAAGCAAGAGAGAATAGGTCTCAGAATGGATGTTCTCC 742427 Query 18476 ATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCT-CGCTATAAAA 18534 | ||||| || | || || | |||||||| || |||| | | | | || Sbjct 742426 ACCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAG 742367 Query 18535 TCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATA 18594 | ||| | ||||||||||| ||| ||||| |||| | || || || ||||| ||| Sbjct 742366 T-TTTGAATCAAATTCTCATCAACGATACCATCAGAGGCGGCAAAGAAGGCCAACACACG 742308 Query 18595 TTTAATGAAATGTTTTTCATTATCCTTGAGATTG---TTCCATTCATCTATATCTTTTGA 18651 | ||||||| | ||||||| | || || ||| ||||| ||| | ||| ||||| Sbjct 742307 TGCGATGAAATATCTTTCATTGGCATTAAGCTTGTTCTTCCAGTCAGGAACATCCTTTGA 742248 Query 18652 TAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAAT 18711 ||||| | ||||||| ||||| ||||||| ||| |||| |||||||| | |||| Sbjct 742247 GAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAGCCTTCTTGTACATCTGCCAAAT 742188 Query 18712 ATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAATTTTTTATTAACATAGGTTC 18771 ||| || | ||| ||||| || | | | ||| | | || | | | |||| |||||| Sbjct 742187 ATCATCGTATTGGATAGGGAACATGACAAATCTATGCTTGTTCTCTTTCAACAAAGGTTC 742128 Query 18772 TTCC 18775 ||| Sbjct 742127 CTCC 742124 >seq15 Length=115448 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||||||||||| || || || || || |||||||| |||| Sbjct 17 ATGCAGATTTTCGTCAAGACATTGACTGGTAAGACCATCACCTTGGAAGTCGAGTCTTCT 76 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || |||||| | || || |||||||||||||| || ||||| || || Sbjct 77 GATACGATCGATAATGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 136 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||||||||||| | |||||| ||||| | || || || ||| Sbjct 137 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 196 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || ||||| || || || ||||| ||||| ||| Sbjct 197 ATCCAGAAGGAGTCTACTCTTCACTTGGTTTTGAGATTGAGAGGTGGT 244 Score = 132 bits (146), Expect = 7e-26 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||||| || || ||||| || || || ||||||||| ||| Sbjct 245 ATGCAGATTTTCGTCAAGACATTAACAGGCAAAACCATCACCTTGGAAGTCGAATCTTCA 304 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| | || || |||||||||||||| || ||||| || || Sbjct 305 GACACGATCGATAACGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 364 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||||||||||| | |||||| ||||| | || || || ||| Sbjct 365 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAAT 424 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAA 156055 || || ||| | || ||||| || || || || || || || || |||||| Sbjct 425 ATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGGTTGAGGGGTGGTATGTAAA 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871304721600