Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq15 158 2e-33 seq45 141 2e-28 seq1 132 9e-26 seq23 123 5e-23 >seq15 Length=115448 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || | ||||| ||| || |||||| || ||| Sbjct 246 ATACCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 187 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| || || || ||||| |||||||| |||||||| |||||||| Sbjct 186 GAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGA 127 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || || | ||| |||||| || | ||| || || || Sbjct 126 GGAATACCTTCTTTATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCG 67 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| |||||||| ||||| || | || |||||||| Sbjct 66 ACTTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || | | || || || || | ||||| ||| || |||||| || ||| Sbjct 474 ATACCACCCCTCAACCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 415 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| || || || ||||| |||||||| |||||||| |||||||| Sbjct 414 GAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGA 355 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || || | ||| || ||| || | ||||| ||||| Sbjct 354 GGAATACCTTCTTTATCTTGGATCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCG 295 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||| || |||||||| || | || |||||||| Sbjct 294 ACTTCCAAGGTGATGGTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245 >seq45 Length=579175 Score = 141 bits (156), Expect = 2e-28 Identities = 183/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTAT 192361 ||||||||||||||| | | | || || || || || | | |||| || || || | Sbjct 354876 AATAATACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGA-ATGTTGT 354934 Query 192362 AATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGAT 192421 | || || || |||| | || |||||||| |||||||||||||| |||||||| |||| Sbjct 354935 AGTCGGACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGAT 354994 Query 192422 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACG 192481 | ||||| ||||| || |||||||| || || | || ||||| || | ||| || | Sbjct 354995 CTGGTGGGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTGTCAATGGTATCAGAAG 355054 Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTAT 192541 | || ||||| | |||||||| ||||| || || || |||| || || |||||||| | Sbjct 355055 ACTCGACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTCT 355114 Query 192542 -TAGAAAAA 192549 | |||||| Sbjct 355115 ATTGAAAAA 355123 >seq1 Length=1746572 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || ||||| || || || | || || ||| || || || || Sbjct 813831 ACCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGA 813890 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||||| |||| ||||| || |||||||||||||| |||||||| ||||||||||| Sbjct 813891 CAATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGG 813950 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || ||||| || || | || ||||| |||| || || || || || Sbjct 813951 AATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAAC 814010 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || | |||||||| ||||| || || || |||| || || ||||| || Sbjct 814011 CTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATT 814061 >seq23 Length=838141 Score = 123 bits (136), Expect = 5e-23 Identities = 294/430 (68%), Gaps = 17/430 (4%) Strand=Plus/Minus Query 49646 TAATAATCTATCGGCTACA-AATTCAACATATTGTGACATTAATTCACAATTCATACCCA 49704 ||| ||||| ||||| ||| || ||||||||||| |||| | |||||||||||||||| Sbjct 742919 TAACAATCTGTCGGC-ACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCA 742861 Query 49705 ATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgttta 49763 | | || ||||||||||| || | ||| |||||| | || || ||||||| | Sbjct 742860 AGAGAGAAACAGGTAATGCATCTCTCCAGAAAGTCTTTT-CAATATCCACAGCTTCAGTC 742802 Query 49764 attatcataattat-attattttttgataatttatatttaatatgattcgcatatattaa 49822 || ||| | | || ||| | || | | | | ||| | |||| | ||| || Sbjct 742801 ATGATCTTGGTGATGATTTTCTTATTAGGAGGG-TGTTTCAAATGA---GAGAATAATAG 742746 Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 || || ||||| ||||||||||| ||||| || | |||| ||| || | | ||| ||| Sbjct 742745 GCAGGCGAAATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTT-CGAGAAGGTAA 742687 Query 49883 -TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 49941 |||||||| || |||||||| || |||||||| || | ||||| || || |||| Sbjct 742686 GACCTGGCATCAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGA 742627 Query 49942 ATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCAT--C 49999 | | ||| |||| | || || || | | |||| || | | || | ||| | | Sbjct 742626 AGACACCTTCGATAGCGGCGAAGGCGACCAATCTTTCTGCGTA---TAGTGCATCCTTGC 742570 Query 50000 TAAT-ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 50058 | | |||||| | |||||| ||| |||| || || | || ||| |||| || | Sbjct 742569 TGTTGATCCAACGAAGAGCCCATAATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGG 742510 Query 50059 CTTTAAATAA 50068 | |||||||| Sbjct 742509 CATTAAATAA 742500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479041362600