Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq15 158 2e-33
seq45 141 2e-28
seq1 132 9e-26
seq23 123 5e-23
>seq15
Length=115448
Score = 158 bits (174), Expect = 2e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | | || || || || | ||||| ||| || |||||| || |||
Sbjct 246 ATACCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 187
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||||| |||| || || || ||||| |||||||| |||||||| ||||||||
Sbjct 186 GAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGA 127
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||||||||| || || | ||| |||||| || | ||| || || ||
Sbjct 126 GGAATACCTTCTTTATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCG 67
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | || ||||| |||||||| ||||| || | || ||||||||
Sbjct 66 ACTTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| || | | || || || || | ||||| ||| || |||||| || |||
Sbjct 474 ATACCACCCCTCAACCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 415
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||||| |||| || || || ||||| |||||||| |||||||| ||||||||
Sbjct 414 GAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGA 355
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||||||||| || || | ||| || ||| || | ||||| |||||
Sbjct 354 GGAATACCTTCTTTATCTTGGATCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCG 295
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | || |||||||| || |||||||| || | || ||||||||
Sbjct 294 ACTTCCAAGGTGATGGTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245
>seq45
Length=579175
Score = 141 bits (156), Expect = 2e-28
Identities = 183/249 (73%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTAT 192361
||||||||||||||| | | | || || || || || | | |||| || || || |
Sbjct 354876 AATAATACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGA-ATGTTGT 354934
Query 192362 AATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGAT 192421
| || || || |||| | || |||||||| |||||||||||||| |||||||| ||||
Sbjct 354935 AGTCGGACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGAT 354994
Query 192422 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACG 192481
| ||||| ||||| || |||||||| || || | || ||||| || | ||| || |
Sbjct 354995 CTGGTGGGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTGTCAATGGTATCAGAAG 355054
Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTAT 192541
| || ||||| | |||||||| ||||| || || || |||| || || |||||||| |
Sbjct 355055 ACTCGACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTCT 355114
Query 192542 -TAGAAAAA 192549
| ||||||
Sbjct 355115 ATTGAAAAA 355123
>seq1
Length=1746572
Score = 132 bits (146), Expect = 9e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | || ||||| || || || | || || ||| || || || ||
Sbjct 813831 ACCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGA 813890
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||||||| |||| ||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 813891 CAATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGG 813950
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||| || || ||||| || || | || ||||| |||| || || || || ||
Sbjct 813951 AATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAAC 814010
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| | |||||||| ||||| || || || |||| || || ||||| ||
Sbjct 814011 CTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATT 814061
>seq23
Length=838141
Score = 123 bits (136), Expect = 5e-23
Identities = 294/430 (68%), Gaps = 17/430 (4%)
Strand=Plus/Minus
Query 49646 TAATAATCTATCGGCTACA-AATTCAACATATTGTGACATTAATTCACAATTCATACCCA 49704
||| ||||| ||||| ||| || ||||||||||| |||| | ||||||||||||||||
Sbjct 742919 TAACAATCTGTCGGC-ACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCA 742861
Query 49705 ATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgttta 49763
| | || ||||||||||| || | ||| |||||| | || || ||||||| |
Sbjct 742860 AGAGAGAAACAGGTAATGCATCTCTCCAGAAAGTCTTTT-CAATATCCACAGCTTCAGTC 742802
Query 49764 attatcataattat-attattttttgataatttatatttaatatgattcgcatatattaa 49822
|| ||| | | || ||| | || | | | | ||| | |||| | ||| ||
Sbjct 742801 ATGATCTTGGTGATGATTTTCTTATTAGGAGGG-TGTTTCAAATGA---GAGAATAATAG 742746
Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882
|| || ||||| ||||||||||| ||||| || | |||| ||| || | | ||| |||
Sbjct 742745 GCAGGCGAAATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTT-CGAGAAGGTAA 742687
Query 49883 -TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 49941
|||||||| || |||||||| || |||||||| || | ||||| || || ||||
Sbjct 742686 GACCTGGCATCAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGA 742627
Query 49942 ATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCAT--C 49999
| | ||| |||| | || || || | | |||| || | | || | ||| | |
Sbjct 742626 AGACACCTTCGATAGCGGCGAAGGCGACCAATCTTTCTGCGTA---TAGTGCATCCTTGC 742570
Query 50000 TAAT-ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 50058
| | |||||| | |||||| ||| |||| || || | || ||| |||| || |
Sbjct 742569 TGTTGATCCAACGAAGAGCCCATAATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGG 742510
Query 50059 CTTTAAATAA 50068
| ||||||||
Sbjct 742509 CATTAAATAA 742500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984479041362600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |