Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq23 149 1e-30
seq45 147 4e-30
seq15 140 6e-28
seq1 125 1e-23
>seq23
Length=838141
Score = 149 bits (164), Expect = 1e-30
Identities = 298/429 (69%), Gaps = 17/429 (4%)
Strand=Plus/Minus
Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891
|| ||||| || ||||| | |||||||| ||||| || ||||| | ||||| ||
Sbjct 743035 TTCTGGTAATCGGAAACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTT 742976
Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC---CTATCAATACATAT 38948
| ||| ||||| ||||||||| | | || || ||| || | ||| | | |
Sbjct 742975 TCCATGAAATCGAATGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAG---T 742919
Query 38949 AATAATCTATCGGCCACA-AATTCAACATATTGTAACATTAATTCACAATTCATACCCAA 39007
|| ||||| ||||| ||| || ||||||||||| |||| | |||||||||||||||||
Sbjct 742918 AACAATCTGTCGGC-ACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCAA 742860
Query 39008 TAATTTAAATGGTAATGCATC-ATCAATAAATTCtttttctatttctacagcttgtttaa 39066
| || ||||||||||| || | ||| || ||||| || || ||||||| | |
Sbjct 742859 GAGAGAAACAGGTAATGCATCTCTCCAGAAAGTC-TTTTCAATATCCACAGCTTCAGTCA 742801
Query 39067 ttatcataattat-attattttttgataatttatatttaatatgattcgcatataGTAAA 39125
| ||| | | || ||| | || | | | | ||| | |||| | ||| ||
Sbjct 742800 TGATCTTGGTGATGATTTTCTTATTAGGA-GGGTGTTTCAAATGA---GAGAATAATAGG 742745
Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA- 39184
|| || ||||| ||||||||||||||||| || | |||| ||| || | | ||| |||
Sbjct 742744 CAGGCGAAATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTT-CGAGAAGGTAAG 742686
Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244
|||||||| || |||||||| || |||||||| || | ||||| || || |||||
Sbjct 742685 ACCTGGCATCAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAA 742626
Query 39245 TATACCCTC 39253
| ||| ||
Sbjct 742625 GACACCTTC 742617
>seq45
Length=579175
Score = 147 bits (162), Expect = 4e-30
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|||||||||||||| | || | || || || || || | || || ||| || ||
Sbjct 354877 ATAATACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAG 354936
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| || |||| || |||| |||||||| ||||||||||| || |||||||| || ||
Sbjct 354937 TCGGACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGATCT 354996
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| ||||| || |||||||| || || | || ||||| || ||||| || ||
Sbjct 354997 GGTGGGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTGTCAATGGTATCAGAAGAC 355056
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| ||||| | |||||||| ||||| || || || |||| ||| || ||||||||
Sbjct 355057 TCGACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 355112
>seq15
Length=115448
Score = 140 bits (154), Expect = 6e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || || || || || | ||||| ||| || ||||| || ||
Sbjct 246 ATACCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 187
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || | || || || || ||||| ||||| || |||||||| || |||||
Sbjct 186 GAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGA 127
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| || || | ||| |||||| || ||||| || || ||
Sbjct 126 GGAATACCTTCTTTATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCG 67
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | || ||||| |||||||| ||||| || | ||| ||||||||
Sbjct 66 ACTTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| || | | || || || || | ||||| ||| || ||||| || ||
Sbjct 474 ATACCACCCCTCAACCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 415
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || | || || || || ||||| ||||| || |||||||| || |||||
Sbjct 414 GAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGA 355
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| || || | ||| || ||| || || ||||| |||||
Sbjct 354 GGAATACCTTCTTTATCTTGGATCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCG 295
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | || |||||||| || |||||||| || | ||| ||||||||
Sbjct 294 ACTTCCAAGGTGATGGTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245
>seq1
Length=1746572
Score = 125 bits (138), Expect = 1e-23
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
||| || ||||||||| | || || ||||| || || || | || || || ||
Sbjct 813823 TTCTTACCACCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTG 813882
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| ||||| || | || | || ||||| || ||||||||||| || |||||||| ||
Sbjct 813883 TAGTCTGACAATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGA 813942
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
|||||||| ||||| || || ||||| || || | || ||||| ||||| || ||
Sbjct 813943 TCAGGTGGAATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAA 814002
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || || || | |||||||| ||||| || || || |||| ||| || ||||| ||
Sbjct 814003 GACTCAACCTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATT 814061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905135140120800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |