Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq23 149 1e-30 seq45 147 4e-30 seq15 140 6e-28 seq1 125 1e-23 >seq23 Length=838141 Score = 149 bits (164), Expect = 1e-30 Identities = 298/429 (69%), Gaps = 17/429 (4%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 || ||||| || ||||| | |||||||| ||||| || ||||| | ||||| || Sbjct 743035 TTCTGGTAATCGGAAACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTT 742976 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC---CTATCAATACATAT 38948 | ||| ||||| ||||||||| | | || || ||| || | ||| | | | Sbjct 742975 TCCATGAAATCGAATGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAG---T 742919 Query 38949 AATAATCTATCGGCCACA-AATTCAACATATTGTAACATTAATTCACAATTCATACCCAA 39007 || ||||| ||||| ||| || ||||||||||| |||| | ||||||||||||||||| Sbjct 742918 AACAATCTGTCGGC-ACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCAA 742860 Query 39008 TAATTTAAATGGTAATGCATC-ATCAATAAATTCtttttctatttctacagcttgtttaa 39066 | || ||||||||||| || | ||| || ||||| || || ||||||| | | Sbjct 742859 GAGAGAAACAGGTAATGCATCTCTCCAGAAAGTC-TTTTCAATATCCACAGCTTCAGTCA 742801 Query 39067 ttatcataattat-attattttttgataatttatatttaatatgattcgcatataGTAAA 39125 | ||| | | || ||| | || | | | | ||| | |||| | ||| || Sbjct 742800 TGATCTTGGTGATGATTTTCTTATTAGGA-GGGTGTTTCAAATGA---GAGAATAATAGG 742745 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA- 39184 || || ||||| ||||||||||||||||| || | |||| ||| || | | ||| ||| Sbjct 742744 CAGGCGAAATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTT-CGAGAAGGTAAG 742686 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 |||||||| || |||||||| || |||||||| || | ||||| || || ||||| Sbjct 742685 ACCTGGCATCAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAA 742626 Query 39245 TATACCCTC 39253 | ||| || Sbjct 742625 GACACCTTC 742617 >seq45 Length=579175 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||||||||||||| | || | || || || || || | || || ||| || || Sbjct 354877 ATAATACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAG 354936 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || |||| || |||| |||||||| ||||||||||| || |||||||| || || Sbjct 354937 TCGGACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGATCT 354996 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| ||||| || |||||||| || || | || ||||| || ||||| || || Sbjct 354997 GGTGGGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTGTCAATGGTATCAGAAGAC 355056 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | |||||||| ||||| || || || |||| ||| || |||||||| Sbjct 355057 TCGACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 355112 >seq15 Length=115448 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | ||||| ||| || ||||| || || Sbjct 246 ATACCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 187 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || || || ||||| ||||| || |||||||| || ||||| Sbjct 186 GAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGA 127 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || || | ||| |||||| || ||||| || || || Sbjct 126 GGAATACCTTCTTTATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCG 67 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| |||||||| ||||| || | ||| |||||||| Sbjct 66 ACTTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || | | || || || || | ||||| ||| || ||||| || || Sbjct 474 ATACCACCCCTCAACCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 415 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || || || ||||| ||||| || |||||||| || ||||| Sbjct 414 GAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGA 355 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || || | ||| || ||| || || ||||| ||||| Sbjct 354 GGAATACCTTCTTTATCTTGGATCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCG 295 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || |||||||| || |||||||| || | ||| |||||||| Sbjct 294 ACTTCCAAGGTGATGGTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245 >seq1 Length=1746572 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || ||||| || || || | || || || || Sbjct 813823 TTCTTACCACCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTG 813882 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || ||||| || | || | || ||||| || ||||||||||| || |||||||| || Sbjct 813883 TAGTCTGACAATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGA 813942 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| ||||| || || ||||| || || | || ||||| ||||| || || Sbjct 813943 TCAGGTGGAATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAA 814002 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || | |||||||| ||||| || || || |||| ||| || ||||| || Sbjct 814003 GACTCAACCTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATT 814061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135140120800