Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq12 122 3e-22 seq67 95.1 4e-14 >seq12 Length=1129233 Score = 122 bits (134), Expect = 3e-22 Identities = 505/780 (65%), Gaps = 29/780 (4%) Strand=Plus/Plus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTCACAGC 155649 || |||| ||||||||| ||| | || | | ||| || ||||| |||| |||||||| Sbjct 997436 GAGGCCAAATTACATACGGCAATTTCATCCT--TCGATGAATATTCAACAACCTCACAGC 997493 Query 155650 ACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCAT 155709 | || || || |||||||| || || |||| ||||| || || ||| || |||| Sbjct 997494 AAAGATTCGAGGATTTGATGGTTCCCAAGTTCTGTTGGTTCGACTTGGAGTTGCAGGCAT 997553 Query 155710 CCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGA 155769 |||| || || | | | || |||||||| || |||||| || ||||| ||| | Sbjct 997554 CCTTATAAAGCAAGAAAGGAGTTCCTGTTTCAGTCTGTGAAATTAGGATCTTCTCCCACA 997613 Query 155770 GGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGC- 155828 | ||| || | | || | || || ||| |||||||| || || Sbjct 997614 CTTTACGAGCCCTCACCTGACGAATATAAGATCCCCGCGATTCATATTTGCAGTAGAGTT 997673 Query 155829 GTTC---GGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAAC 155885 |||| || || || || |||| ||| | |||||| || |||| ||||| Sbjct 997674 GTTCAAAGG--ATTTTCCCC--AACAGTCAGATAATCCAGGACAGGTATCCTCCGAAAAC 997729 Query 155886 AGCGACCAAATTTTATTACCGATT---ACACGCTCCATAAATACATCACTCGCCCAAATA 155942 || ||| | || || || || ||||| | ||| || | ||| ||||| | Sbjct 997730 AGGCTCCACACTTCAT---CGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGA 997786 Query 155943 GCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAG 156002 |||||||| |||||||| ||| | ||| || | ||||| ||||| | |||||| Sbjct 997787 GCATAGAATAGGTCCCTGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAGTCTAAG 997846 Query 156003 AATTCCTCAATATCAGGATGGTGTGGCTCCAGATA--CATAGCAAAACTACCA-TTC--C 156057 |||||| ||||| | ||| || || ||||| || || | | |||| || Sbjct 997847 AATTCCATGATATCCGCATGCCACGGTTCTAGATAGGCACAG--ATAGCACCAGGTCGTT 997904 Query 156058 TCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 | || |||||||| || ||||| |||| || | |||||||| | |||||||| | || Sbjct 997905 TATTACCACCCTGGTCAACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAA 997964 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGA-ATATGCGAACCAGATGAGCGAACATTATGA 156176 | ||| | || |||||||| || ||| |||| | || | || | ||||| Sbjct 997965 TTCCACTTGATTCTCCATTGGTACC-CGATATATAGGTTCCTGCTGCCCTTACATTGCTT 998023 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 | ||| | ||||| ||||| | ||| || || ||| |||| | || ||| Sbjct 998024 AAATGCATACCAATTCCACCGGCAGCTTTCGATATCATAGCACATTTGTGAACTGTACGA 998083 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTA-ATTGAGG 156295 || || || || | ||| ||||| || | ||| | || | || || || |||| || Sbjct 998084 AAGATCCCATCTAGAGAGTCATCCTCTAATGAAACCAGGAAACATGACGATAGATTGGGG 998143 Query 156296 TCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 | || || || ||||| || || |||| |||||||| ||| ||||| | ||||| Sbjct 998144 AACT-CAGTACCCGCATTGAAAAGGGTGGGTGATGCATGAAGAAAGTACTTCCTTGACAT 998202 Score = 104 bits (114), Expect = 7e-17 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 155588 AATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTCA 155645 || ||| |||| ||||| || |||| || | | || |||| || || ||||||||| Sbjct 53036 AAGAGAAGCCAAGTTACAGACACCAGTTTCGTC-TGGT-GCTGAGTACTCGACAATCTCA 52979 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||||| | ||| || ||||||||| || || |||| |||||| || |||||||| Sbjct 52978 CAGCATAAGTTCGAGGACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACAT 52919 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCT 155760 ||||||||||| || ||| |||| || || || || |||| || |||| ||||| Sbjct 52918 GCATCCTTGTAGAGCATGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCT 52864 Score = 98.7 bits (108), Expect = 3e-15 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || || || || || | ||||| || ||||| |||| | ||| ||||||||| Sbjct 52561 TTACCTCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATA 52502 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| || || || ||||| ||| || | || |||| | ||||| || |||||| Sbjct 52501 CCATTTGAGGTACCGTTGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATA 52442 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || | |||||||| || | || ||||| || || || || | ||||| | | Sbjct 52441 TGCATACCAATACCGCCGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAG 52382 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 || |||||||||||||| || | ||| | | | | |||| ||| | || || || Sbjct 52381 ATGCCTTCAATAGAATCGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGT 52322 Query 156300 GGTGTTCCAGCGTTGAA 156316 || || || || ||||| Sbjct 52321 GGGGTACCCGCATTGAA 52305 >seq67 Length=395348 Score = 95.1 bits (104), Expect = 4e-14 Identities = 123/168 (73%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| || | ||| | ||||||||||||||| || ||||| ||||| || || | ||| | Sbjct 359428 TTGTGGAACATGCATATTCATCTCATCACCATCGAAATCGGCATTGTAAGGAGTAGTGAC 359487 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 | | ||| || ||||| || | || ||| ||||| |||||||||||||||| Sbjct 359488 AGACAAGTTGATACGGAAGGTGG-AGTATGG--CATGACACGAACTTTATGACACATCAT 359544 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACC 303794 ||||| | || || | |||||||||||||| | ||||| ||||| Sbjct 359545 GGACATCTTATGAAGGGAAGGCTGACGATTGAACAAGACGGGATCACC 359592 Score = 86.0 bits (94), Expect = 2e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 302562 AATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGT 302621 || |||||| || |||| ||| | |||||||| ||||| |||||||| | || Sbjct 358363 AACCATAATATCCTCCAATGCCTTCAACAAACGACGTTGAATGTAACCAGTCTCTGCAGT 358422 Query 302622 TTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTC 302681 ||| || || || ||||| | ||| |||||||| |||| ||||||||||| | || | Sbjct 358423 TTTCACTGCAGTGTCAATCAAACCTTCACGACCAGCCATGGCATGGAAGAACAATTCCTG 358482 Query 302682 CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 ||| || || | | | ||| | ||||||||||| | ||| | |||| || Sbjct 358483 GGGTGTAAGACCTCTCAAGTACGAGTTTTCAACGAAACCTTTAGACTCAGCAGAATAATC 358542 Query 302742 GAACTTGGTAAAGTGTGGCA 302761 |||||| |||||||||| Sbjct 358543 ATCCTTGGTGAAGTGTGGCA 358562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816166817612