Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq45 181 2e-40 seq1 147 4e-30 >seq45 Length=579175 Score = 181 bits (200), Expect = 2e-40 Identities = 186/239 (78%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | ||||| ||||||| || ||||| || || || || || || | Sbjct 354881 TACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCGG 354940 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | |||| ||||| || | ||| || ||||||||||| | ||| || |||||||| | Sbjct 354941 ACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTG 355000 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | ||||| ||||||||||||||||| ||| || ||||| ||||| |||||| || || Sbjct 355001 GGATTCCCTCCTTATCTTGAATCTTCTGC-TTGACATTGTCAATGGTATCAGAAGACTCG 355059 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819 |||||||| || || ||||| || ||||| ||||| || || || |||||| || |||| Sbjct 355060 ACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATT-TTCTATT 355117 >seq1 Length=1746572 Score = 147 bits (162), Expect = 4e-30 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || |||||||||| || ||||| ||||| || || || || || Sbjct 813831 ACCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGA 813890 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | |||| || || || | || || ||||||||||| | ||| || ||||| || || Sbjct 813891 CAATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGG 813950 Query 82703 TATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 ||||| ||||| ||||| ||||| ||| || ||||| ||||| || ||| || || | Sbjct 813951 AATTCCCTCCTTGTCTTGGATCTTCTGC-TTGACATTGTCAATAGTGTCAGAAGACTCAA 814009 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 | ||||| || || ||||| || ||||| ||||| || || || ||||| | ||| || Sbjct 814010 CCTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATTGATAAGTT 814069 Query 82822 TCT 82824 ||| Sbjct 814070 TCT 814072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826243945764