Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq12 114 3e-20
>seq12
Length=1129233
Score = 114 bits (126), Expect = 3e-20
Identities = 305/462 (66%), Gaps = 7/462 (2%)
Strand=Plus/Plus
Query 110515 TGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTC 110574
|| |||| |||||| | | | || || || |||||||||||||| || || ||| ||
Sbjct 52333 TGTCTTCCTGCTTTTTGGTTGCGATGAAGGACGATTCTATTGAAGGCATCTACGATACTT 52392
Query 110575 TTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATA 110634
| ||||| ||| | ||||| || | | | || || |||||||| || |||| |
Sbjct 52393 TGAAAGAGTGTGCCTTGATTTCGAAGACCGCCGGCGGTATTGGTATGCATATTCACAACG 52452
Query 110635 TTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAA 110694
|||| | | || | | ||||| | || ||| | |||| ||| || ||||||
Sbjct 52453 TTCGTGCCACTGGCTCTTACATCGCCGGTACCAACGGTACCTCAAATGGTATTATTCCAA 52512
Query 110695 TGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATG 110751
|| | | || |||||| ||||||| | ||| || | ||||| ||| || ||| |
Sbjct 52513 TGATTCGTGTTTTCAACAACACTGCCAGATACGTCGACCAAGGAGGTAACAAAAGACCAG 52572
Query 110752 GCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTC 110811
| | |||| | ||| | ||||| ||||| |||| || || || ||| | || |
Sbjct 52573 GTGCCATTGCAGTGTATATGGAACCATGGCACGCAGACATCTTCGATTTCATTGATATCA 52632
Query 110812 GTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTT 110871
| || ||||| || || ||| | || |||||||| || || | ||||||
Sbjct 52633 GAAAGAATCATGGTAAGGAGGAAATCCGTGCCCGTGATTTGTTCCCAGCCCTATGGATTC 52692
Query 110872 CAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATC 110931
| || || |||||||| |||||| | | || || ||| ||| ||| | || ||||
Sbjct 52693 CCGACTTGTTCATGAAGCGTGTTGAGCAGAACGGTCAATGGACTC-TAT-TTTCGCCATC 52750
Query 110932 --GTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGA 110971
|||| || || ||||| || || ||| | ||||||||
Sbjct 52751 CGAAGCTCCGGGCCTTTCTGACGTGTACGGAGACGAGTTTGA 52792
Score = 93.3 bits (102), Expect = 1e-13
Identities = 158/223 (71%), Gaps = 7/223 (3%)
Strand=Plus/Minus
Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735
|||| |||| |||| || ||| | ||||||||||| || || ||||||| | ||
Sbjct 997974 TCAAGTGGAATTGTGCCTATGCTGCGAGTCTTCAACAGTACCGCTCAATATGTTGACCAG 997915
Query 110736 GGTGGTAAGA---GAAATGGCTC-ATTTGCTATCTATCTCGAACCTTGGCATTCAGATAT 110791
|||||||| | || ||| | || || | |||||| ||||| |||||| | |||||
Sbjct 997914 GGTGGTAATAAACGACCTGGTGCTATCTG-TGCCTATCTAGAACCGTGGCATGCGGATAT 997856
Query 110792 ATTTGAATTCTTAGAACTTCGTAAA-AATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850
| ||||||||||| ||| ||| || || || ||||| || || | ||
Sbjct 997855 CATGGAATTCTTAGA-CTTGAAAAAGAACCACGGTAAGGAAGAGATGAGGGCCAGGGACC 997797
Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893
|||| ||||| | ||||| ||||||| ||||||||||||||
Sbjct 997796 TATTCTATGCTCTTTGGATCCCAGATTTGTTCATGAAACGTGT 997754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186811644341036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |