Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq12 114 3e-20 >seq12 Length=1129233 Score = 114 bits (126), Expect = 3e-20 Identities = 305/462 (66%), Gaps = 7/462 (2%) Strand=Plus/Plus Query 110515 TGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTC 110574 || |||| |||||| | | | || || || |||||||||||||| || || ||| || Sbjct 52333 TGTCTTCCTGCTTTTTGGTTGCGATGAAGGACGATTCTATTGAAGGCATCTACGATACTT 52392 Query 110575 TTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATA 110634 | ||||| ||| | ||||| || | | | || || |||||||| || |||| | Sbjct 52393 TGAAAGAGTGTGCCTTGATTTCGAAGACCGCCGGCGGTATTGGTATGCATATTCACAACG 52452 Query 110635 TTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAA 110694 |||| | | || | | ||||| | || ||| | |||| ||| || |||||| Sbjct 52453 TTCGTGCCACTGGCTCTTACATCGCCGGTACCAACGGTACCTCAAATGGTATTATTCCAA 52512 Query 110695 TGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATG 110751 || | | || |||||| ||||||| | ||| || | ||||| ||| || ||| | Sbjct 52513 TGATTCGTGTTTTCAACAACACTGCCAGATACGTCGACCAAGGAGGTAACAAAAGACCAG 52572 Query 110752 GCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTC 110811 | | |||| | ||| | ||||| ||||| |||| || || || ||| | || | Sbjct 52573 GTGCCATTGCAGTGTATATGGAACCATGGCACGCAGACATCTTCGATTTCATTGATATCA 52632 Query 110812 GTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTT 110871 | || ||||| || || ||| | || |||||||| || || | |||||| Sbjct 52633 GAAAGAATCATGGTAAGGAGGAAATCCGTGCCCGTGATTTGTTCCCAGCCCTATGGATTC 52692 Query 110872 CAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATC 110931 | || || |||||||| |||||| | | || || ||| ||| ||| | || |||| Sbjct 52693 CCGACTTGTTCATGAAGCGTGTTGAGCAGAACGGTCAATGGACTC-TAT-TTTCGCCATC 52750 Query 110932 --GTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGA 110971 |||| || || ||||| || || ||| | |||||||| Sbjct 52751 CGAAGCTCCGGGCCTTTCTGACGTGTACGGAGACGAGTTTGA 52792 Score = 93.3 bits (102), Expect = 1e-13 Identities = 158/223 (71%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| |||| |||| || ||| | ||||||||||| || || ||||||| | || Sbjct 997974 TCAAGTGGAATTGTGCCTATGCTGCGAGTCTTCAACAGTACCGCTCAATATGTTGACCAG 997915 Query 110736 GGTGGTAAGA---GAAATGGCTC-ATTTGCTATCTATCTCGAACCTTGGCATTCAGATAT 110791 |||||||| | || ||| | || || | |||||| ||||| |||||| | ||||| Sbjct 997914 GGTGGTAATAAACGACCTGGTGCTATCTG-TGCCTATCTAGAACCGTGGCATGCGGATAT 997856 Query 110792 ATTTGAATTCTTAGAACTTCGTAAA-AATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850 | ||||||||||| ||| ||| || || || ||||| || || | || Sbjct 997855 CATGGAATTCTTAGA-CTTGAAAAAGAACCACGGTAAGGAAGAGATGAGGGCCAGGGACC 997797 Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 |||| ||||| | ||||| ||||||| |||||||||||||| Sbjct 997796 TATTCTATGCTCTTTGGATCCCAGATTTGTTCATGAAACGTGT 997754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811644341036