Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq15 140 8e-28 seq1 98.7 2e-15 seq45 86.0 1e-11 >seq15 Length=115448 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | ||||| ||||| ||||| |||||||| ||| ||| ||| Sbjct 248 CAGATTTTCGTCAAGACATTAACAGGCAAAACCATCACCTTGGAAGTCGAATCTTCAGAC 307 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || || |||||||| ||||| |||||||| ||| || || || Sbjct 308 ACGATCGATAACGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAGCAG 367 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| ||||| |||||||| |||||||| || || | | || ||||| || Sbjct 368 AGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAATATC 427 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAG 206384 ||||| ||||||||||||||| | || ||||| Sbjct 428 CAGAAGGAGTCTACTCTTCACTTGGTCTTGAG 459 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| |||||||| || |||||| Sbjct 20 CAGATTTTCGTCAAGACATTGACTGGTAAGACCATCACCTTGGAAGTCGAGTCTTCTGAT 79 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || || |||||||| ||||| |||||||| ||| || || || Sbjct 80 ACGATCGATAATGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAGCAG 139 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| ||||| |||||||| |||||||| || || | | || ||||| || Sbjct 140 AGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAATATC 199 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||| ||||||||||||||| | ||||||||| Sbjct 200 CAGAAGGAGTCTACTCTTCACTTGGTTTTGAGA 232 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 ||||||||| | ||||||||||||||| ||||||| ||| ||||||| | || || || Sbjct 232 TCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACC 173 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 |||||| | |||||| ||||| ||||| Sbjct 172 ATCTTCTAACTGCTTACCGGCAAAGAT 146 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 204758 CTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCA 204817 ||||| || | ||||||||||||||| ||||||| ||| ||||||| | || || ||| Sbjct 459 CTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCA 400 Query 204818 TCTTCCAGCTGCTTTCCGGCGAAGAT 204843 ||||| | |||||| ||||| ||||| Sbjct 399 TCTTCTAACTGCTTACCGGCAAAGAT 374 >seq1 Length=1746572 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || ||||| || || ||||||||| | || || ||||| Sbjct 814034 ACCGGTAAGACCATTACCTTGGAGGTTGAGTCTTCTGACACTATTGACAATGTCAAGCAG 813975 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || || || ||| | ||||| || || ||| Sbjct 813974 AAGATCCAAGACAAGGAGGGAATTCCACCTGATCAGCAGAGATTGATCTTTGCTGGTAAG 813915 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| ||||| || || ||| | || |||||| ||||||| || || || | ||| Sbjct 813914 CAGTTGGAGGATGGCAGAACATTGTCAGACTACAACATCCAGAAGGAATCCACCTTGCAC 813855 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 813854 TTAGTCTTGAGA 813843 >seq45 Length=579175 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || |||||||| || |||||| || | || || ||||| Sbjct 355085 ACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTCTGATACCATTGACAATGTCAAGCAG 355026 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || || ||||| || || || ||| | ||||| || || ||| Sbjct 355025 AAGATTCAAGATAAGGAGGGAATCCCACCAGATCAGCAGAGATTGATCTTTGCTGGTAAG 354966 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||| || || || |||||| |||| |||||| | || || || || || | ||| Sbjct 354965 CAATTGGAGGACGGCAGAACTTTGTCCGACTACAACATTCAAAAGGAATCAACATTGCAC 354906 Query 206374 CTTGTTTTGAGA 206385 | ||| | ||| Sbjct 354905 TTGGTTCTCAGA 354894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819649201996